Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq9882 111 5e-20 >seq9882 Length=79551 Score = 111 bits (122), Expect = 5e-20 Identities = 180/258 (70%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 5460 CAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATC 5519 |||| || |||||||| || |||| ||| || |||| || ||||| |||||| | || | Sbjct 45988 CAAAATAACCATGAGCAGCTACAAAGTTGTATGTTTATTTTTCTTGACCGAATATGTAAC 46047 Query 5520 CATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTC 5579 | | || ||| | | || ||||| | || | |||||| |||| | | Sbjct 46048 CTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACAAAAAAAC 46107 Query 5580 CATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACG 5639 ||||||| || || | | || | |||||| ||||| ||||| | |||||| || | Sbjct 46108 TATGCATA-CACTAAATAGGGAGCCGCTGAATACACCAGCTACACCTAACATGTGAAATG 46166 Query 5640 GATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGA 5699 | || ||||| | ||||| || ||||||||||| | ||||||| | ||| ||||| ||| Sbjct 46167 GGTGTATAAGAAAGTTGTGCTCAGCCTGGAATACAATCATAAAGCTGAAAATACCAAAGA 46226 Query 5700 TACCAAGAGGCATACCAT 5717 | | | || |||||||| Sbjct 46227 TTCTTATAGACATACCAT 46244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152628364055490