Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9146 158 1e-33 seq11595 136 5e-27 >seq9146 Length=70564 Score = 158 bits (174), Expect = 1e-33 Identities = 350/522 (67%), Gaps = 5/522 (1%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || || |||||||| ||||| ||||| |||| | || | |||||| || || ||||| Sbjct 54237 CAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAA 54296 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAA 37294 || ||||| | ||||| ||| || | ||| || |||| |||||| | || || ||||| Sbjct 54297 CCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAA 54355 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||||||||||| || || ||||| | ||| | | |||||| | ||| Sbjct 54356 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCCATCG-- 54413 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 ||||| | | | ||| | ||| || |||| || || ||||||||||| Sbjct 54414 -ATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCG 54472 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 |||||| | | | |||| | ||||| | ||||| ||||| | || | ||||||||| Sbjct 54473 AAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACAT 54532 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 ||||| |||||||| ||||| || || ||||| || |||||| | || || || | Sbjct 54533 CTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGAC 54592 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 ||||||||| | || | ||| | || || ||| || ||||| || || Sbjct 54593 TTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGC 54652 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATC 37654 || ||||| ||||| | ||| || || || | |||| | | || || | |||||| Sbjct 54653 GAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATC 54712 Query 37655 ATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | || | ||||| ||| ||||| || ||||||| || Sbjct 54713 ACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAA 54754 >seq11595 Length=173172 Score = 136 bits (150), Expect = 5e-27 Identities = 390/594 (66%), Gaps = 7/594 (1%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || || ||||| || ||||| ||||| |||| | || || || || || || |||||| Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAA 37294 || ||||| | |||| ||| || | ||| || || | ||||||| | || || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||||||||||| || || ||||| | ||| | |||| ||| | ||| Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATCCATCG-- 65044 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 ||||| | | | ||| | || || ||| || ||| |||||||| || Sbjct 65045 -ATCCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACG 65103 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 |||||| | | | |||| ||||| | ||||||||||| | || | ||||||||| Sbjct 65104 AAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACAT 65163 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 ||||| |||||||| ||||| || || || || || |||||| | || || || | Sbjct 65164 CTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGAC 65223 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 ||| ||||| | || | ||| | || || ||| || ||||| ||| || Sbjct 65224 TTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGC 65283 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATC 37654 |||||||| || || | ||| ||||| || | ||| | | || || | |||||| Sbjct 65284 GAAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATC 65343 Query 37655 ATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTT 37714 |||| ||||| ||| ||||| ||| | ||||| || ||| || || Sbjct 65344 GCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTT 65403 Query 37715 ATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATCAG 37767 ||||||| ||| || | | || ||||| || | |||| |||||||||| Sbjct 65404 ATACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACA-TACAGAATCTATCAG 65456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592230062608600