Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq9253 98.7 8e-16 seq8798 84.2 2e-11 >seq9253 Length=129212 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||| || | |||||||| ||||| ||||| || || |||||||| | Sbjct 94857 CCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCG 94798 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | |||| ||||| || || ||||| || |||| |||||||||||||| || Sbjct 94797 AGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGG 94738 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||||| ||| ||| | | | ||||| | || ||| Sbjct 94737 ATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTACC 94678 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || ||||| | ||||| || || |||||||| Sbjct 94677 TCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 94631 >seq8798 Length=192640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | || ||||| || ||| ||| |||||||| ||||| |||| Sbjct 21551 CCACCTCTGAGACGAAGTACTAAATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCG 21492 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGG 48658 || ||| | || || | ||||||||||||||| || || | ||| || ||| ||||| Sbjct 21491 AGTGTTCTCCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 21432 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | || |||||||| ||||| || || | | || || || ||| || Sbjct 21431 ATC-CCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 21373 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || || | || || |||||||||||||| Sbjct 21372 TTCCAAAGTGATTGTTTTGCCGGTAAGGGTCTTGACAAAAATCTGCAT 21325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380883211038945