Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq10724 156 5e-33 seq8685 111 2e-19 seq8998 105 8e-18 >seq10724 Length=33194 Score = 156 bits (172), Expect = 5e-33 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 || ||||| |||||| || || | |||||||| ||| || |||| || ||||| Sbjct 30696 ACACCTGAAGGAGAACAAGAGGTTGAATGTGAAGAAGATGTTTATGTTCTTGATGCAGCT 30755 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 |||||||| ||| ||||| | |||||| |||||||||||| ||||||| ||||| Sbjct 30756 GAAGAAGCTGGAATTGATTTACCTTACTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCT 30815 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| ||||| |||||||||| || || || || || ||||||||| Sbjct 30816 GGTAAAGTTGTGTCTGGTTCTGTTGATCAATCAGACCAAAGTTTTCTTGATGATGATCAG 30875 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGATTGTGTTGTGGTT 164260 |||| | |||||| || || || |||| ||| ||||| || |||||| |||| | Sbjct 30876 ATTGGTGAAGGATTTGTTCTCACTTGTGCAGCTTATCCTACTTCTGATGTTGTTATTAAA 30935 Query 164261 ACTGATCAAGAGGAGAATCTC 164281 ||| | ||||| || ||||| Sbjct 30936 ACTCACCAAGAAGATGATCTC 30956 >seq8685 Length=252540 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 164053 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTG 164112 ||| ||||| || || | || ||||| ||||||||||||||||| | ||| ||||| Sbjct 168758 AGATGATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTG 168817 Query 164113 TCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAG 164172 | | |||||||| || || ||||||| ||||| |||||||| || ||||||||| Sbjct 168818 TAGAGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTC 168877 Query 164173 TGATCAGTCATTCCTAGACGATGATCAGATTGCAGCA-GGATTCGTGCTTACGTGTGTAG 164231 ||| || || || || |||| ||| ||| || | || | || | || ||||| | Sbjct 168878 GGATGGTTCGTTTCTTGATGATGGTCACTTTG-AGAATGGTTATGTTTTGACTTGTGTGG 168936 Query 164232 CATATCCAACATCTGATTGTGTT 164254 | |||||| |||||||||||| Sbjct 168937 CTTATCCACAGTCTGATTGTGTT 168959 >seq8998 Length=67453 Score = 105 bits (116), Expect = 8e-18 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 164049 GTGA-AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 164107 |||| ||| || |||||||| | || ||||| ||||||||||||||||| | |||| Sbjct 36708 GTGACAGATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTAC 36767 Query 164108 TCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 164167 ||||| | ||||||||||| || | ||||| ||||| ||||| | || |||||| Sbjct 36768 TCTTGCAGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGAC 36827 Query 164168 CAGAGTGATCAGTCATTCCTAGACGATGATCAGATTGCAGCA-GGATTCGTGCTTACGTG 164226 || |||| || || || || ||| |||| ||| | | || | ||| | || || Sbjct 36828 CAATCTGATGGTTCGTTTCTTGATGATAATCA-TTTGGACAATGGTTATGTGTTGACTTG 36886 Query 164227 TGTAGCATATCCAACATCTGATTGTGT 164253 ||| || || |||| ||||||||||| Sbjct 36887 TGTGGCTTACCCAAAGTCTGATTGTGT 36913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563127124994200