Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11595 116 7e-21 seq9146 107 4e-18 >seq11595 Length=173172 Score = 116 bits (128), Expect = 7e-21 Identities = 377/577 (65%), Gaps = 9/577 (2%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || || | ||| || || || | ||| ||||||||||| || ||| | | |||| ||| Sbjct 64859 TAAAGAAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAG 64918 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG-CC 48240 || | |||||||||| || | | || |||||||| || | || |||| || Sbjct 64919 AAAGTTAATCCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACC 64977 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAA-GCGT 48299 ||||||||||| || || || ||||| || || | || |||| | | | Sbjct 64978 GGAGAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGA 65037 Query 48300 TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 || || |||||| | | |||||| | || |||||| | ||| || || || | Sbjct 65038 TCCA-TC---GATCCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTT 65093 Query 48360 CTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCT 48419 | || || || ||||| | | | ||| || | ||| ||| ||| || Sbjct 65094 CAATAGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGA 65153 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 ||||||||||| || | |||||| || ||||| ||||| ||||| || || | | Sbjct 65154 GACTATACATCTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCG 65213 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCA 48538 |||| | || || || |||| ||||| ||| |||||||| || || ||| Sbjct 65214 CCTCCGAGACTTGTACATCTGACATGAATCGAGA-AGCGAGATTCTCTAAAACGATTCCA 65272 Query 48539 TCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA 48598 ||||||||||| ||||| || ||||| ||||| | || || || ||| || | | ||| Sbjct 65273 TCTGAAGCAGCGAAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGA 65332 Query 48599 GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 | ||| | || |||||| || || |||||||| |||||||||| || || Sbjct 65333 TTCTCCCAATCGCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCT 65392 Query 48659 AGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 ||||| || ||||| |||| || | || |||| Sbjct 65393 TCGGCTTTCTTATACATCTCCCAGATCTGTGGGTAGT 65429 >seq9146 Length=70564 Score = 107 bits (118), Expect = 4e-18 Identities = 374/575 (65%), Gaps = 9/575 (2%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||| | ||| || || || | ||| ||||||||||| || ||| || | || ||| Sbjct 54228 TAGAGAAGGCAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAG 54287 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG-CC 48240 || | ||||||||||| || | | || |||||||| |||| | |||| || Sbjct 54288 AAAGTTAAACCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACC 54346 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAA-GCGT 48299 ||||||||||| || || || ||||| || || | || | |||| | | Sbjct 54347 GGAGAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGA 54406 Query 48300 TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 || || |||||| | | |||||| | ||| |||||| | | ||| || || || | Sbjct 54407 TCCA-TC---GATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTT 54462 Query 48360 CTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCT 48419 | || || || ||||| | | | ||| || | ||| ||| ||| || Sbjct 54463 CAATTGCGCGAAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGA 54522 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 ||||||||||| || | |||||| || ||||| || || ||||| || || | | Sbjct 54523 GACTATACATCTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCG 54582 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCA 48538 |||| | || || || |||| ||||| ||| |||||||| || || ||| Sbjct 54583 CCTCCGAGACTTGAACATCTGACATGAATC-GAGAAGCAAGATTCTCTAAAACGATTCCA 54641 Query 48539 TCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA 48598 ||||| ||||| || || || || || ||||| | ||| || || || || | | ||| Sbjct 54642 TCTGATGCAGCGAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGA 54701 Query 48599 GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 | ||| | || |||| | || || |||||||| | |||||||| || || Sbjct 54702 TTCTCCCAATCACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCT 54761 Query 48659 AGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||||| |||||||| |||| || | ||||| Sbjct 54762 TCGGCTTTCTTGTACATCTCCCAGATCTGTGGATA 54796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931396388665600