Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11595 95.1 2e-14 >seq11595 Length=173172 Score = 95.1 bits (104), Expect = 2e-14 Identities = 376/575 (65%), Gaps = 19/575 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||| ||||| || || || |||||| || ||||| | ||||| Sbjct 65418 ATCTGGGAGATGTATAAGAAAGCCGAAGCATCGTTCTGGACTGCTGAAGAAGTAGATCTA 65359 Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | | ||| ||||| ||| | |||| | | | ||| | || ||| |||| Sbjct 65358 TCACAAGAC--GGACGCGATTGGGAGAATCTAAACGACGGCGAACGTCACTTTATCAAAC 65301 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | || ||||| || || || ||||| || || |||||||| ||| Sbjct 65300 ACGTCCTCGCTTTCTTCGCTGCTTCAGATGGAATCGTTTTAGAGAATCTCGCTTCTCGAT 65241 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATC 25713 ||| || || || | |||||| ||| ||| ||||| ||||| || || || Sbjct 65240 TCATGTCAGATGTACAAGTCTCGGAGGCGC-GTGCTTTTTACGGATTCCAAATCGCGATT 65182 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGC 25772 || ||| | || |||||| ||||| ||||| ||| || || || | ||| | Sbjct 65181 GAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGAT-ACTTATATCAAAGATAACAA 65123 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||||||||| || ||| |||| || || || || || | || ||| || | Sbjct 65122 AGAGAGAGATCATCTCTTTCGTGCTATTGAAACTATTCCTTGCGTTGCGAAGAAAGCTCA 65063 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC-GAGCGGCTGGTAGCCT 25891 |||||| |||| ||||||| | | | | | | || || || || | ||||| | Sbjct 65062 GTGGGCGATGACGTGGATCGATGG----ATCTCAAACCTTCGCTGAACGAATCGTAGCTT 65007 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT-CGTTTGCGGCCATCTTCTGGCTCAAG 25950 | ||| ||| || || ||||| ||| |||| | ||||| | ||||||||||| ||| Sbjct 65006 TCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGCT-CTATCTTCTGGCTAAAG 64948 Query 25951 CAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGG 26008 | | | |||| |||| || || | ||||| || |||||| | ||| | ||||| | Sbjct 64947 -AAACGAGGACTCATG-CCTGGATTAACTTTCTCAAACGAGTTAATCTCTCGAGACGAAG 64890 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 | | ||| | ||||| || ||||| || ||| || Sbjct 64889 GCTTACACTGCGATTTCGCTTGCCTTCTTTACTCG 64855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928708782289600