Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq8685 138 1e-27 seq10724 129 7e-25 seq8473 118 1e-21 seq9882 116 5e-21 seq8998 113 6e-20 >seq8685 Length=252540 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 102823 TGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGA 102882 ||| || ||||| || |||| |||| |||| || | ||| | ||||| ||||| || Sbjct 168944 TGGATAAGCCACACAAGTCAAAACATAACCATTCTCAAAGTGACCATCATCAAGAAACGA 168885 Query 102883 TTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACC 102942 ||| ||||| || ||||||| |||||||||||||||| |||||||||||||| Sbjct 168884 ACCATCCGACTGATCAACTTCACCCGATACAATCTTACCAGCACATGTAGAACACGCACC 168825 Query 102943 AGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTG 103002 ||| | ||| |||||||| | ||||| |||||||| ||||| || || | ||||| || Sbjct 168824 AGCTCTACAAGAATAAGGTAACTCAACTCCTGCTTCTTCAGCTGCATCCAATATATACTG 168765 Query 103003 ATCATC 103008 |||||| Sbjct 168764 ATCATC 168759 >seq10724 Length=33194 Score = 129 bits (142), Expect = 7e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 102809 ACCACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCG 102868 || ||||| ||||| || || || | || || |||||||| ||| | | | ||||| Sbjct 30928 ACAACATCAGAAGTAGGATAAGCTGCACAAGTGAGAACAAATCCTTCACCAATCTGATCA 30869 Query 102869 TCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAA 102928 ||||| ||||| ||| ||| |||||| |||| ||| || ||| |||||||||||| Sbjct 30868 TCATCAAGAAAACTTTGGTCTGATTGATCAACAGAACCAGACACAACTTTACCAGCACAA 30809 Query 102929 GTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCG 102988 | || || | |||||||||||| || ||||| | ||||| || ||||| ||||| || Sbjct 30808 CTTGAGCAAGAACCAGCACGACATGAGTAAGGTAAATCAATTCCAGCTTCTTCAGCTGCA 30749 Query 102989 TCTAGAATATATTGATCATCCTCACA 103014 || |||| ||| ||| || ||||| Sbjct 30748 TCAAGAACATAAACATCTTCTTCACA 30723 >seq8473 Length=72639 Score = 118 bits (130), Expect = 1e-21 Identities = 179/255 (70%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 102787 TTCTTCTTGTTCTGTCAGGACTACCACATCCGAAGTTGGGTATGCCACGCAGGTCAGAAC 102846 ||||||||| | || | | || ||||| ||||| || || || | || || ||||| Sbjct 6225 TTCTTCTTGGTGGGTTTGAATAACAACATCAGAAGTAGGATAAGCAGCACAAGTGAGAAC 6284 Query 102847 AAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACC 102906 | | ||| | | | ||| || ||||| || || ||| || |||||| |||| ||| Sbjct 6285 ATATCCTTCACCCATTTGTTCATCATCAAGGAAACTTTGGTCAGATTGATCAACAGAACC 6344 Query 102907 CGATTCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATC 102966 || ||| |||||||||||| | || || | ||||||||| || || ||||||| ||| Sbjct 6345 AGACACAACTTTACCAGCACAACTTGAGCAAGAACCAGCACGGCATGAGTAAGGCAAATC 6404 Query 102967 AACACCTGCTTCATCAGCAGCGTCTAGAATATATTGATCATCCTCACAGGTGATATCATG 103026 || || ||||| ||||| || || || | ||| ||||| ||||| || || || Sbjct 6405 AATTCCAGCTTCTTCAGCTGCATCAAGGACATAAACGTCATCTTCACATTCAATCTCTTG 6464 Query 103027 ATCACCTTCGGATGT 103041 || ||||| | ||| Sbjct 6465 TTCTCCTTCAGGTGT 6479 >seq9882 Length=79551 Score = 116 bits (128), Expect = 5e-21 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 103442 AAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCA 103501 || ||||||||||| ||||| | ||||||||| | || ||||| ||||| ||||||| Sbjct 45990 AAATAACCATGAGCAGCTACAAAGTTGTATGTTTATTTTTCTTGACCGAATATGTAACCT 46049 Query 103502 TAGTTTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACC 103560 | || ||||||| |||| || || || | || | | | | || || |||| ||| Sbjct 46050 TCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA-GAAGTTACAAAAAAACT 46108 Query 103561 GTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGG 103620 |||||| |||| || || || || | ||| || ||||| || || | |||||| || || Sbjct 46109 ATGCATA-CACTAAATAGGGAGCCGCTGAATACACCAGCTACACCTAACATGTGAAATGG 46167 Query 103621 GTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAA 103668 ||| || |||| ||| || || || ||||| || | ||| || |||| Sbjct 46168 GTGTATAAGAAAGTTGTGCTCAGCCTGGAATACAATCATAAAGCTGAA 46215 >seq8998 Length=67453 Score = 113 bits (124), Expect = 6e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATC 102873 ||| || ||||||| ||||| || |||| ||| |||| || | |||| ||||| Sbjct 36908 ATCAGACTTTGGGTAAGCCACACAAGTCAACACATAACCATTGTCCAAATGATTATCATC 36849 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGA 102933 ||||| || ||| ||| || ||| ||| | ||||||||||||||||||| || Sbjct 36848 AAGAAACGAACCATCAGATTGGTCAACATCACCTGTCACAATCTTACCAGCACAAGTTGA 36789 Query 102934 ACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAG 102993 ||| |||||||| | || || ||||| | ||||| |||||||| ||||| || || | Sbjct 36788 ACAAGCACCAGCTCTGCAAGAGTAAGGTAAGTCAACTCCTGCTTCTTCAGCTGCATCCAA 36729 Query 102994 AATATATTGATCATC 103008 || ||||| ||||| Sbjct 36728 TATGTATTGGTCATC 36714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633420829852200