Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq9882 129 7e-25 seq9890 120 4e-22 seq8728 107 2e-18 >seq9882 Length=79551 Score = 129 bits (142), Expect = 7e-25 Identities = 184/258 (71%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 124314 CAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAAC 124373 |||| ||||| || || ||||| | ||||||||||| || |||||| ||||| | |||| Sbjct 45988 CAAAATAACCATGAGCAGCTACAAAGTTGTATGTTTATTTTTCTTGACCGAATATGTAAC 46047 Query 124374 CATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAAC 124433 | | || || || | ||||| ||||| ||||| | | ||| || |||| | ||| Sbjct 46048 CTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACAAAAAAAC 46107 Query 124434 CATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAG 124493 ||||| | | |||| || || | ||| | || ||||| ||| |||||| || | Sbjct 46108 TATGCA-TACACTAAATAGGGAGCCGCTGAATACACCAGCTACACCTAACATGTGAAATG 46166 Query 124494 GATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGA 124553 | || || |||| ||| ||||| || ||||| || | ||||||| ||||| |||| ||| Sbjct 46167 GGTGTATAAGAAAGTTGTGCTCAGCCTGGAATACAATCATAAAGCTGAAAATACCAAAGA 46226 Query 124554 TACCAAGTGGCATACCAT 124571 | | | | |||||||| Sbjct 46227 TTCTTATAGACATACCAT 46244 >seq9890 Length=295843 Score = 120 bits (132), Expect = 4e-22 Identities = 155/212 (73%), Gaps = 14/212 (7%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || ||||||||||| || ||||| || |||||||| | Sbjct 44048 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCTCTCCTTATATGTTGTTCTCTAGTCT 44107 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTG-----TC--CACTGACTGACCTACA 139427 | | || | || | || || |||| ||| || |||| || ||| | | Sbjct 44108 GCATCGCCA-----TACGAAGAGCTGGCTTCCCTGAAGAATCAACACTAAC--ACCAATA 44160 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 || || || || ||| |||||||||||| | || || || ||||| |||||||||||| Sbjct 44161 ATCCTCCCTGGCATCATTCTCTTATACTCTTGTGAAGTAGCTAAGAACGCAGCATGAGGA 44220 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 || || || ||||| |||| |||||||||||| Sbjct 44221 CCACCATAACCCATTGGAACACCAAACCTTTG 44252 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | |||||| |||||||| ||||| | |||||||| ||||||||||| Sbjct 42226 AAATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 42285 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 42286 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 42334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || || ||||| ||||||||| || ||||| || | || || | ||| Sbjct 44589 CATTGCCTCCGCAGCCGCAGTCCCTTCATCTAGAAGCGATGCATTAGACATAGGAAGTCC 44648 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || || || | || ||| |||| | || | ||| | | || ||||| || Sbjct 44649 AGTGAGATCAGTAATCATGGTCTGGAAATTAAGCAACGATTCAAGACGACCTTGAGAGAT 44708 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| |||||||| ||||||||| |||||||| Sbjct 44709 CTCAGCTTGATAAGGAGTGTATTGAGTGTACCAAGCTGGATTCTC 44753 >seq8728 Length=275805 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 14/212 (7%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || |||||||| || || ||||| || |||||||| | Sbjct 100597 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTTATATGTTGTTCTCTAGTCT 100656 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTG-----TC--CACTGACTGACCTACA 139427 | | || | || |||| || ||| | | || |||| || ||| | | Sbjct 100657 GCATAGCCA-----TACGCAGAGCTGGCTTTCCAGAAGAATCAACACTAAC--ACCAATA 100709 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 || || || || ||| |||||||||||| | || || || ||||| ||||| |||||| Sbjct 100710 ATCCTCCCTGGCATCATTCTCTTATACTCTTGTGAAGTAGCTAAGAAAGCAGCGTGAGGA 100769 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 || || || ||||| |||| |||||||||||| Sbjct 100770 CCACCATAACCCATTGGAACACCAAACCTTTG 100801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 138163 ATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTG 138222 |||||| | |||||| |||||||| ||||| | |||||||| ||||||||||| | Sbjct 98750 ATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATGAG 98809 Query 138223 GAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 |||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 98810 GAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 98856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| |||| |||| |||||||| || | || || | || Sbjct 101138 CATAGCCTCCGCAGCCGCAGTACCTTCGTCTAGAAGAGATGCATTAGACATAGGAAGACC 101197 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || || || | || ||| |||| | || | ||| | | || ||||| || Sbjct 101198 AGTAAGATCAGTAATCATGGTCTGGAAATTAAGCAACGATTCAAGACGACCTTGAGAGAT 101257 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| |||||||| ||||||||| |||||||| Sbjct 101258 CTCAGCTTGATAAGGAGTGTATTGAGTGTACCAAGCTGGATTCTC 101302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578913612921800