Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq11663 163 4e-35 seq10724 158 2e-33 seq8473 150 2e-31 seq11047 134 2e-26 seq8998 125 1e-23 seq8685 116 5e-21 seq9882 111 2e-19 seq9543 86.0 8e-12 >seq11663 Length=261191 Score = 163 bits (180), Expect = 4e-35 Identities = 260/371 (70%), Gaps = 4/371 (1%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| ||||| ||| | ||| ||| |||||| ||||| ||||| || || |||||| Sbjct 132339 GCTGGAAGCACATGAGAATTCTCTGGGTGAAAATTGTCATTAGGACCGTAAAGATTTGTA 132398 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| ||||||||||| || || || | || || ||||||||||| ||| Sbjct 132399 GGCATACCAGAGATAGCATCCCATTGATGTTGAATTCGATAAGCTTGACACATCTTAATA 132458 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 ||||||||||| ||||| ||||| | |||||| | ||||||||||||||| | | ||| Sbjct 132459 CCAGCAATCTTAGCAATTGCATACCATTCATTAGTCGGTTCAAGAGGACCAGTGAGAAGA 132518 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 | || |||||||| | ||||| || ||||| || || ||||| ||||| Sbjct 132519 GAAGACTCAGGTATAGGTTGAGGAGCAAATTTAGGGTAAATACAAGATGAACCGAGAAAG 132578 Query 47226 AAAAGTTTCTTAACACCAAACTTACGT--GCAGAATGAATGATGTTTGATTGAATCATCA 47283 | ||||| |||||||| ||| || | ||| ||||||| || | || || | Sbjct 132579 AGTAGTTTTTTAACACC--GTTTATGTAAGAAGAGTGAATGACATTGGTCTGGATTTGGA 132636 Query 47284 AATTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCACCTTTG 47343 ||| | ||||| | | || ||| || || ||| ||| ||||| || || | Sbjct 132637 GATTCAAACCAATGAAATCAGCTGGGTAAGTGTTGTTGGCATGAATCCCACCGACTTTAG 132696 Query 47344 CAGCAGCAAGA 47354 | ||||||||| Sbjct 132697 CTGCAGCAAGA 132707 >seq10724 Length=33194 Score = 158 bits (174), Expect = 2e-33 Identities = 162/208 (78%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | ||||| ||| | |||||||||||| ||||| || |||||||||| ||| Sbjct 30949 TCTTCTTGGTGAGTTTTAATAACAACATCAGAAGTAGGATAAGCTGCACAAGTGAGAACA 30890 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACT--GATCACTTTGGTCTACTGTAC 32738 || ||||| |||| ||||||||||| ||||| ||| | || ||| || || | || Sbjct 30889 AATCCTTCACCAATCTGATCATCATC-AAGAAA-ACTTTGGTCTGATTGATCAACAGAAC 30832 Query 32739 CAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAAT 32798 |||| |||| ||||| |||||| ||| || | ||| |||||||| ||||| ||||| Sbjct 30831 CAGACACAACTTTACCAGCACAACTTGAGCAAGAACCAGCACGACATGAGTAAGGTAAAT 30772 Query 32799 CAACCCCACCTTCCTCTGCTGCATCAAG 32826 ||| ||| |||| || ||||||||||| Sbjct 30771 CAATTCCAGCTTCTTCAGCTGCATCAAG 30744 >seq8473 Length=72639 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | |||| ||| | |||||||||||| ||||| ||| |||||||||| ||| Sbjct 6226 TCTTCTTGGTGGGTTTGAATAACAACATCAGAAGTAGGATAAGCAGCACAAGTGAGAACA 6285 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | ||||| | ||||| |||||||| | ||| || ||| ||| || || | |||| Sbjct 6286 TATCCTTCACCCATTTGTTCATCATCAAGGAAACTTTGGTCAGATTGATCAACAGAACCA 6345 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || |||| ||||| |||||| ||| || | ||| ||||| || ||||| |||||| Sbjct 6346 GACACAACTTTACCAGCACAACTTGAGCAAGAACCAGCACGGCATGAGTAAGGCAAATCA 6405 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGA 32828 | ||| |||| || ||||||||||||| Sbjct 6406 ATTCCAGCTTCTTCAGCTGCATCAAGGA 6433 >seq11047 Length=258962 Score = 134 bits (148), Expect = 2e-26 Identities = 253/371 (68%), Gaps = 1/371 (0%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||||||||| ||| | | ||| ||||| || || ||||| || || || ||| Sbjct 127260 GCAGGAAGAACATGTGAATTCTGAGGGTGGAAATTGTCGTTAGGACCGTAGAGATTAGTA 127319 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| |||||| |||| |||||| ||| | | || || ||||| |||| || Sbjct 127320 GGCATGCCAGAGATTGCATCCCATCCATGCTGAATACGATAAGCTTGACAAGTCTTAATC 127379 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 || || || || ||||| || || | |||||| | |||||||| | || | | | | Sbjct 127380 CCTGCGATTTTAGCAATCGCGTACCATTCATTAGTTGGTTCAAGTGATCCGGTTAACAAA 127439 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 | ||| ||| ||||| | ||||| || |||||||| ||||| ||||| || Sbjct 127440 GCTGATTCAGGAATTGGTTGAGGAGCAAATTTAGGGTAAATGCAAGAAGATCCAAGGAAG 127499 Query 47226 AAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAATGATGTTTGATTGAATCATCAAA 47285 | ||| ||||| || ||| | | ||||| ||||| | || | ||||||| | | Sbjct 127500 AGAAGCTTCTTCACTCCATGTTCATAAGCAGAGTGAATAACATTAGTTTGAATCTGGAGA 127559 Query 47286 TTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCACCTTTGCA 47345 ||| || ||||| | | |||||| || |||||| ||| ||||| || || || Sbjct 127560 TTAACACCAATGAAATCAGCAGGATAAGTGTTGTTAGCATGAATCCCACCAACTTTAGCT 127619 Query 47346 GCAGC-AAGAT 47355 || || ||||| Sbjct 127620 GCTGCTAAGAT 127630 >seq8998 Length=67453 Score = 125 bits (138), Expect = 1e-23 Identities = 147/196 (75%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 32647 ATCAGAAGTTGGATATGCAACACAAGTGAGCACA-AACCCTTCTTCAATTTGATCATCAT 32705 |||||| |||| || || |||||||| | |||| |||| || | ||| | ||| ||||| Sbjct 36908 ATCAGACTTTGGGTAAGCCACACAAGTCAACACATAACCATTGTCCAAAT-GATTATCAT 36850 Query 32706 CCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATG 32765 | | ||||| |||| |||||| || ||| | ||||||||||| ||||||| || Sbjct 36849 CAAGAAACGAACCATCAGATTGGTCAACATCACCTGTCACAATCTTACCAGCACAAGTTG 36790 Query 32766 AACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAA 32825 |||| ||||| || | |||||||| ||| ||||| || |||| || |||||||| | Sbjct 36789 AACAAGCACCAGCTCTGCAAGAGTAAGGTAAGTCAACTCCTGCTTCTTCAGCTGCATCCA 36730 Query 32826 GGATGTATTGATCATC 32841 |||||||| ||||| Sbjct 36729 ATATGTATTGGTCATC 36714 >seq8685 Length=252540 Score = 116 bits (128), Expect = 5e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 32632 AGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA-AACCCTTCTT 32690 ||||| ||| | | |||||| |||||| || |||||||| | ||| |||| |||| Sbjct 168968 AGTTTGAATAACACAATCAGACTGTGGATAAGCCACACAAGTCAAAACATAACCATTCT- 168910 Query 32691 CAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCT 32750 ||| ||| ||||||| | ||||| ||| || || ||| ||| |||||||||| Sbjct 168909 CAAAGTGACCATCATCAAGAAACGAACCATCCGACTGATCAACTTCACCCGATACAATCT 168850 Query 32751 TACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTT 32810 |||| ||||| | ||||| ||||| || | |||||| || ||| ||||| || ||| Sbjct 168849 TACCAGCACATGTAGAACACGCACCAGCTCTACAAGAATAAGGTAACTCAACTCCTGCTT 168790 Query 32811 CCTCTGCTGCATCAAGGATGTATTGATCATC 32841 | || |||||||| | || || |||||||| Sbjct 168789 CTTCAGCTGCATCCAATATATACTGATCATC 168759 >seq9882 Length=79551 Score = 111 bits (122), Expect = 2e-19 Identities = 179/256 (70%), Gaps = 1/256 (0%) Strand=Plus/Plus Query 27001 AAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCA 27060 || || ||||| || || || | |||||| || | || |||||||||||| | ||||| Sbjct 45990 AAATAACCATGAGCAGCTACAAAGTTGTATGTTTATTTTTCTTGACCGAATATGTAACCT 46049 Query 27061 TAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCG 27120 | || || ||| |||| || || || | || | ||| || || | | | Sbjct 46050 TCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACAAAAAAACTA 46109 Query 27121 TGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGG 27180 |||||| || || || || || | |||||| ||||| ||||| | |||||| || ||| Sbjct 46110 TGCATA-CACTAAATAGGGAGCCGCTGAATACACCAGCTACACCTAACATGTGAAATGGG 46168 Query 27181 TGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATA 27240 || ||||| | ||||| || ||||||||||||| ||| || | ||| ||||| |||| Sbjct 46169 TGTATAAGAAAGTTGTGCTCAGCCTGGAATACAATCATAAAGCTGAAAATACCAAAGATT 46228 Query 27241 CCAAGAGGCATAGCAT 27256 | | || |||| ||| Sbjct 46229 CTTATAGACATACCAT 46244 >seq9543 Length=59296 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | ||||| || | |||||||||||||| || || ||||| || | ||| Sbjct 1430 TCTTCTTTGTGGGTTTCGATGACGACATCAGAAGTTGGGTAAGCCACACAGGTTAAGACA 1371 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | ||||||| || || |||||||| || || ||| || ||||| | | ||| Sbjct 1370 TATCCTTCTTTCATCTGGTCATCATCTAAAAAGCTCTGGTCCGACTGGTCAATGGAGCCA 1311 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || | | || || || ||| ||| || | || ||||| || ||||| ||||| Sbjct 1310 GAGATGACTTTCCCGGCGCAACTTGAGCAAGATCCAGCACGGCATGAGTACGGCAAATCG 1251 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | ||| | ||||| || || ||||||| ||| Sbjct 1250 ATTCCAGCGTCCTCAGCGGCGTCAAGGACGTA 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665396946663800