Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9060 125 9e-24 seq5306 123 3e-23 seq11467 118 1e-21 seq8589 118 1e-21 seq9133 113 5e-20 seq11595 86.0 7e-12 seq9146 86.0 7e-12 >seq9060 Length=178556 Score = 125 bits (138), Expect = 9e-24 Identities = 198/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || ||||| || | || |||| | || || ||| || ||| |||||| Sbjct 22913 CCTGGTACAGGTAAGACTCTATTGGCTAGAGCTGTGGCTGGAGAAGCAGGTGTACCATTC 22972 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | || | || | | ||||| ||| | ||||||||||||||||| || ||| Sbjct 22973 TTTTCTTGTGCGGCTTCGGAGTTTGTTGAGCTTTTTGTTGGTGTGGGTGCGTCTAGAGTT 23032 Query 175435 CGCGATCTCTTTGAAATCGCCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| | || |||||| || |||||||| ||||||||||||| Sbjct 23033 AGGGATTTGTTTGAGAAGGCTAAGGCGAAAGCT--CCTTGTATTGTATTCATTGATGAGA 23090 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | ||| | | ||||| ||| | | || |||||| |||||||| Sbjct 23091 TTGATGCTGTTGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGA 23148 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||||| |||||||| | | || ||||||||||| ||| Sbjct 23149 ACAAACGATTAATCAGTTGTTAACTGAGATGGATGGGTTT 23188 >seq5306 Length=3186 Score = 123 bits (136), Expect = 3e-23 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || ||||| ||| |||| ||||||| || |||||||||||| || ||| Sbjct 409 GTTGAGTTTCTGAAGAAACCTGAGAGATTCACTGCTGTTGGTGCCAAGATTCCGAAAGGT 468 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || || || | || |||||| || ||| Sbjct 469 GTTCTCCTTATTGGTCCTCCTGGTACTGGTAAAACTCTTTTGGCAAAAGCCATTGCTGGT 528 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||| ||| Sbjct 529 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 588 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| ||| || |||||||| || | | ||| || || || || ||| Sbjct 589 GTTGGTGCTTCAAGAGTCCGCGATCTTTTCAAGAAAGCCAAGGAGAACGCTCCTTGCATT 648 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 || || ||||||| ||||||||||| || | |||| | | | || |||| | Sbjct 649 GTGTTTGTTGATGAAATTGATGCGGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 705 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| ||| | ||||| || || || ||||||||||| ||||| Sbjct 706 GGTAATGATGAAAGAGAACAGACACTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 765 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | ||||| || | || |||| || || || | | || || ||||| Sbjct 766 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGA 818 >seq11467 Length=72189 Score = 118 bits (130), Expect = 1e-21 Identities = 196/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| |||||||| || | || |||| | || |||||| | || || ||| Sbjct 11400 CCAGGTACAGGAAAGACTCTATTAGCTAGAGCTGTTGCTGGTGAAGCCGGAGTACCGTTC 11459 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | || |||| | | ||||| ||| | |||||||| || ||||| |||||| Sbjct 11460 TTTTCATGTGCTGCTTCTGAGTTTGTTGAGCTTTTTGTTGGAGTTGGTGCTTCTAGGGTT 11519 Query 175435 CGCGATCTCTTTGA--AATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| || || ||||| || |||||||| || |||||||||| Sbjct 11520 AGGGATTTGTTTGAGAAAGCGAAGTCGAAAGCT--CCTTGTATTGTGTTTATTGATGAGA 11577 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| ||||| | ||| | | ||||| ||| | | | |||||| || ||||| Sbjct 11578 TTGATGCTGTGGGAAGACAAAGAGGAGCTGGAATGGGAGGT--GGAAATGATGAAAGAGA 11635 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 ||||| |||||||| ||| | || ||||||||||| || Sbjct 11636 GCAAACGATTAATCAGCTATTGACGGAGATGGATGGGTT 11674 >seq8589 Length=45551 Score = 118 bits (130), Expect = 1e-21 Identities = 196/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| |||||||| || | || |||| | || |||||| | || || ||| Sbjct 11400 CCAGGTACAGGAAAGACTCTATTAGCTAGAGCTGTTGCTGGTGAAGCCGGAGTACCGTTC 11459 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | || |||| | | ||||| ||| | |||||||| || ||||| |||||| Sbjct 11460 TTTTCATGTGCTGCTTCTGAGTTTGTTGAGCTTTTTGTTGGAGTTGGTGCTTCTAGGGTT 11519 Query 175435 CGCGATCTCTTTGA--AATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| || || ||||| || |||||||| || |||||||||| Sbjct 11520 AGGGATTTGTTTGAGAAAGCGAAGTCGAAAGCT--CCTTGTATTGTGTTTATTGATGAGA 11577 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| ||||| | ||| | | ||||| ||| | | | |||||| || ||||| Sbjct 11578 TTGATGCTGTGGGAAGACAAAGAGGAGCTGGAATGGGAGGT--GGAAATGATGAAAGAGA 11635 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 ||||| |||||||| ||| | || ||||||||||| || Sbjct 11636 GCAAACGATTAATCAGCTATTGACGGAGATGGATGGGTT 11674 >seq9133 Length=41873 Score = 113 bits (124), Expect = 5e-20 Identities = 195/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || ||||| || | || |||| | || || ||| | ||| || ||| Sbjct 23708 CCGGGTACAGGGAAGACGCTTTTAGCTAGAGCTGTTGCTGGCGAAGCTGGTGTACCGTTC 23767 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | || |||| | | ||||| ||| | ||||||||||| ||||| || ||| Sbjct 23768 TTTTCATGTGCTGCTTCGGAGTTTGTTGAGCTTTTTGTTGGTGTTGGTGCTTCTAGAGTT 23827 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 23828 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCT-CCTTGTATTGTGTTTATTGATGAGAT 23886 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| ||||| | |||| | | ||||| ||| | | | ||||| ||||||||| Sbjct 23887 TGATGCTGTGGGGAGGCAAAGAGGAGCTGGAATGGGAGGT--GGTAATGATGAGAGAGAA 23944 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||||| |||||||| || | || ||||||||||| ||| Sbjct 23945 CAAACGATTAATCAGCTTTTGACTGAGATGGATGGGTTT 23983 >seq11595 Length=173172 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 65003 AAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGT 65062 ||||| | || || ||| |||||| || | ||||| |||| ||| | || | | Sbjct 65093 AAACTATTCCTTGCGTTGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGATGGA---T 65037 Query 65063 CTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCG 65122 ||| ||||||| || || | | || || || ||||| || |||||||||||||||| Sbjct 65036 CTCAAACCTTCGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCG 64977 Query 65123 GGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCT 65182 | || ||| |||| | ||| | ||||| || || |||||||| || || |||| Sbjct 64976 GTAGCTTTTGCTCTATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGATTAACTTTCT 64917 Query 65183 CAAATGAACTTATTTCCCGAGATGAGGG 65210 |||| || | || || ||||| || || Sbjct 64916 CAAACGAGTTAATCTCTCGAGACGAAGG 64889 >seq9146 Length=70564 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 65003 AAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGT 65062 ||||| | || || || |||||| || ||||||| |||| ||| | || | | Sbjct 54462 AAACTATCCCTTGCGTTACGAAGAAAGCACAATGGGCGATGACTTGGATCGATGGA---T 54406 Query 65063 CTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCG 65122 ||| | || || || || | | || || || ||||| || |||||||||||||||| Sbjct 54405 CTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCG 54346 Query 65123 GGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCT 65182 | || || | || | ||| | ||||| || ||||||||||| || || |||| Sbjct 54345 GTAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGAGGTCTCATGCCTGGTTTAACTTTCT 54286 Query 65183 CAAATGAACTTATTTCCCGAGATGAGGG 65210 |||||||||| || || ||||| || || Sbjct 54285 CAAATGAACTAATCTCTCGAGACGAAGG 54258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596482239839200