Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq9882 136 5e-27 >seq9882 Length=79551 Score = 136 bits (150), Expect = 5e-27 Identities = 208/295 (71%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 8156 CAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAAC 8215 |||| || ||||||||||| |||| || || || | || ||||||||| || | |||| Sbjct 45988 CAAAATAACCATGAGCAGCTACAAAGTTGTATGTTTATTTTTCTTGACCGAATATGTAAC 46047 Query 8216 CATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAAC 8275 | | || ||| || | ||| || || || ||||| | | ||| || || ||| ||| Sbjct 46048 CTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACAAAAAAAC 46107 Query 8276 CGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAG 8335 |||||| |||| || || || || | ||| | ||| ||||| ||| ||| || || | Sbjct 46108 TATGCATA-CACTAAATAGGGAGCCGCTGAATACACCAGCTACACCTAACATGTGAAATG 46166 Query 8336 GATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAA 8395 | || ||||||| ||| ||||| || |||||||| | ||| ||| | || ||||| | | Sbjct 46167 GGTGTATAAGAAAGTTGTGCTCAGCCTGGAATACAATCATAAAGCTGAAAATACCAAAGA 46226 Query 8396 TACCTAGAGGCATTCCATCAGAGAA--TGAA-------CCCTGACCAAATGGATA 8441 | | || || ||| |||| | | || | || |||||||||| |||||| Sbjct 46227 TTCTTATAGACATACCATAAAAAAAATTTAAAAAACTTCCCTGACCAATTGGATA 46281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615772214649800