Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq9882 98.7 3e-16 >seq9882 Length=79551 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/266 (68%), Gaps = 1/266 (0%) Strand=Plus/Minus Query 42741 TTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCA 42800 ||||| |||| ||| || | | || | |||| |||| ||| ||| | || ||||| Sbjct 46252 TTTTTTTTATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCA 46193 Query 42801 GGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGG 42860 |||||| || ||| ||||||| || || || || ||| | ||||| || || ||||| | Sbjct 46192 GGCTGAGCACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAG 46133 Query 42861 TGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAAC 42920 || || | || | ||||||| || | |||| || ||| | | | | ||||| Sbjct 46132 CGGCTCCCTATT-TAGTGTATGCATAGTTTTTTTGTAACTTCTAGTTTGATCAGGGAAAC 46074 Query 42921 GACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAA 42980 || ||||| ||| ||| | || |||| ||||||||||| | | || || || Sbjct 46073 CACAGAAAATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAA 46014 Query 42981 CATTGTTGCAGCGCATGGTTACTTTG 43006 | |||| || || |||||||| |||| Sbjct 46013 CTTTGTAGCTGCTCATGGTTATTTTG 45988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143512832344820