Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq9882 125 8e-24 >seq9882 Length=79551 Score = 125 bits (138), Expect = 8e-24 Identities = 169/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 68110 AAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCA 68169 || || ||||| ||||| |||| |||||| || | || |||||||||||| ||||||| Sbjct 45990 AAATAACCATGAGCAGCTACAAAGTTGTATGTTTATTTTTCTTGACCGAATATGTAACCT 46049 Query 68170 TAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCA 68229 | || || ||| |||| |||||||| | | || |||||| || | ||| | Sbjct 46050 TCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACAAAAAAACTA 46109 Query 68230 TGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGG 68289 |||| | |||| || || || || | ||||| ||||| || || | ||| || || ||| Sbjct 46110 TGCA-TACACTAAATAGGGAGCCGCTGAATACACCAGCTACACCTAACATGTGAAATGGG 46168 Query 68290 TGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCA 68343 || || || | ||||||||| || ||||| || | ||| || ||||| ||||| Sbjct 46169 TGTATAAGAAAGTTGTGCTCAGCCTGGAATACAATCATAAAGCTGAAAATACCA 46222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571970629783800