Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9253 134 2e-26 seq8634 118 2e-21 seq8798 113 8e-20 seq11021 104 4e-17 seq8683 89.7 9e-13 seq9269 84.2 4e-11 >seq9253 Length=129212 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| | || ||||||| ||| | || | ||||| || || || |||| Sbjct 94858 ACCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGC 94799 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | |||||| || || |||||||||||||| || || |||| ||||||||| || || Sbjct 94798 GAGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGG 94739 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||||| ||||| || || | ||| | ||| || || || || || || || Sbjct 94738 GATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 94679 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 ||||| ||||| || || || ||||| ||||| || || || |||||||| || Sbjct 94678 CTCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTGTT 94625 >seq8634 Length=210279 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||||| || || |||| ||| | || | || || || || || |||| Sbjct 12016 ACCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGC 12075 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || || || ||||||||||||||||| || || |||| ||| ||||| || || Sbjct 12076 GAGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGG 12135 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || ||||| || || | ||| | ||| || || ||||| || ||||| Sbjct 12136 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCGGATGATTCAAC 12195 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 12196 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12243 >seq8798 Length=192640 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| |||||||| |||| |||| || | ||||| |||||| || || Sbjct 20870 ATACCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCA 20811 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||| || || || |||||||| || || || ||| Sbjct 20810 GCCAAGGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGA 20751 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | || | ||| || ||||| || ||| Sbjct 20750 GGAATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCG 20691 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || ||||| || || |||||||| Sbjct 20690 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 20641 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | |||||||| | ||| | || | ||| || ||| || Sbjct 21560 ATTTGCATACCACCTCTGAGACGAAGTACTAAATGGAGAGTGGACTCCTTTTGAATGTTG 21501 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | ||||| ||| |||| || || |||||||| || | ||||| || Sbjct 21500 TAGTCAGCGAGTGTTCTCCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGG 21441 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || || || || |||| || | || |||||| || || Sbjct 21440 TCCGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAG 21381 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| | ||| || ||||| || || || || || ||||| || ||||| Sbjct 21380 CTCTCAACTTCCAAAGTGATTGTTTTGCCGGTAAGGGTCTTGACAAAAATCTGCAT 21325 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| ||||| || |||| || | || | || || || ||||| || Sbjct 21326 ATACCACCTCTTAATCGTAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAATCA 21267 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | ||| |||| || || || ||||| || | ||||| || || || Sbjct 21266 GCCAAAGTCCGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGT 21207 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | ||| | ||| ||| || || || |||| Sbjct 21206 GGGATCCCTTCCTTGTCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 21147 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| |||||||| || || || || || ||||| || ||||| Sbjct 21146 ACCTCCAAAGTAATAGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 21097 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| ||||| || || || || | ||||||||| || || || || ||||| || Sbjct 21708 ATCCTCTAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGGATCCCTTCCTT 21649 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | || | || |||||| || || |||||| |||| ||||| Sbjct 21648 GTCCTGAATCTTAGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCAACCTCTAAGGTTAT 21589 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | || || |||||||||||||| Sbjct 21588 TGTCTTGCCTGTCAAAGTCTTGACAAATATTTGCAT 21553 >seq11021 Length=502384 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| ||||| || || |||| ||| || || || ||||||||||| || Sbjct 217078 TCTTCCAGTTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGTATTCCTTCCTTG 217019 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| || || || || |||||||| || ||||| ||| Sbjct 217018 TCTTGAATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATA 216959 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || ||||| Sbjct 216958 GTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 216924 >seq8683 Length=130760 Score = 89.7 bits (98), Expect = 9e-13 Identities = 103/140 (74%), Gaps = 9/140 (6%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| |||| |||||| || ||||| | ||||| || || ||||| ||||| ||| Sbjct 52298 TCTTCTAGCTGTTCTCCGGCGAATATTAAACGTTGTTGGTCCGGTGGTATACCTTCCTTA 52239 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| |||||| ||||| ||||| ||| || Sbjct 52238 TCTTGGATCTTTGCTTTGACATTGTCAATAGTGTCGGAGGACTCGACT---------ATG 52188 Query 193326 GTTTTACCTGTTAGCGTTTT 193345 |||||||||||||| ||||| Sbjct 52187 GTTTTACCTGTTAGGGTTTT 52168 >seq9269 Length=281999 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||||||||| | | | || ||||| | |||| |||||| ||| || || || | Sbjct 49768 TACCACCTCTAAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGAATGTTGTAATCAG 49709 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 ||| |||||| ||| || | ||| || || ||||| || | || ||||||||||| | Sbjct 49708 CTAAAGTTCTACCATCTTCAAGTTGCTTACCAGCAAATATGAGCCTTTGTTGATCAGGTG 49649 Query 193252 GTATTCCTTCTTTATCTTGTA 193272 |||| |||||||| || |||| Sbjct 49648 GTATACCTTCTTTGTCCTGTA 49628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899522656858800