Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq10330 102 1e-16 seq9990 98.7 1e-15 seq8641 98.7 1e-15 seq8798 96.9 5e-15 >seq10330 Length=49715 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || |||||||| || || ||||| | || || || ||| Sbjct 15686 ATGCAAATATTTGTCAAGACCTTGACTGGTAAGACCATTACCCTTGAGGTGGAGAGCTCT 15627 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| || || || ||||| ||||| || || ||||| || Sbjct 15626 GACACCATTGACAACGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCACCAGACCAG 15567 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | || || ||||||||||| ||| | || ||| | || ||||| Sbjct 15566 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTAGCTGACTATAAC 15507 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || |||||| |||| ||||| || |||||| || Sbjct 15506 ATCCAGAAAGAGTCGACCCTTCACTTGGTGTTACGA 15471 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | || ||||| || || || | || || ||| ||| Sbjct 16142 ATGCAGATCTTCGTTAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 16083 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || ||||||||||| |||||||| || Sbjct 16082 GACACTATCGACAACGTTAAGGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 16023 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || || ||| | || || | | ||||| | ||||||||| Sbjct 16022 CAGAGACTTATCTTTGCTGGAAAACAGTTAGAGGACGGCCGTACTTTGGCTGATTATAAT 15963 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || |||||||| || Sbjct 15962 ATCCAGAAAGAATCAACTCTTCATTTGGT 15934 >seq9990 Length=160576 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| ||||||||||| || || || || || || || ||| Sbjct 159650 ATGCAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACTTTGGAGGTAGAGAGCTCT 159591 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| |||||||| || || || || || || || Sbjct 159590 GACACCATCGACAACGTTAAGGCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 159531 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||| || ||||| ||| ||||| | || || ||| Sbjct 159530 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTACAAT 159471 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| | || ||||| || || || Sbjct 159470 AT-TCAAAAGGAGTCAACCCTTCACTTGGTCTT 159439 >seq8641 Length=178042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| ||||||||||| || || || || || || || ||| Sbjct 927 ATGCAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACTTTGGAGGTAGAGAGCTCT 986 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| |||||||| || || || || || || || Sbjct 987 GACACCATCGACAACGTTAAGGCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 1046 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||| || ||||| ||| ||||| | || || ||| Sbjct 1047 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTACAAT 1106 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| | || ||||| || || || Sbjct 1107 AT-TCAAAAGGAGTCAACCCTTCACTTGGTCTT 1138 >seq8798 Length=192640 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | ||||||||||||||||| || || || || || Sbjct 21097 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACTATTACTTTGGAGGTTGAGAGCTCA 21156 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || || || || ||||| || || || || || Sbjct 21157 GACACCATTGACAATGTCAAAGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGACCAG 21216 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | ||||| | |||||||| Sbjct 21217 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGGACTTTGGCTGATTATAAC 21276 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || ||||| || || || |||||||||| ||| Sbjct 21277 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTACGATTAAGAGGTGGT 21324 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || || ||||| || ||| Sbjct 20869 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTTGAGAGCTCT 20928 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || |||||| || || || ||||| || ||||| || || Sbjct 20929 GACACTATTGACAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATCCCTCCCGATCAG 20988 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||||||||||| |||||| ||||| | | || || || Sbjct 20989 CAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGAAGAACACTCGCTGACTACAAC 21048 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || ||||| ||| Sbjct 21049 ATCCAGAAAGAGTCCACTCTCCATTTGGTG 21078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731764826494000