Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9253 147 4e-30 seq9146 132 9e-26 seq11704 127 4e-24 seq10330 113 9e-20 seq9269 113 9e-20 seq8798 109 1e-18 seq8726 107 4e-18 seq11595 98.7 2e-15 seq11021 91.5 3e-13 seq10212 84.2 4e-11 >seq9253 Length=129212 Score = 147 bits (162), Expect = 4e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| ||||| | ||| ||||| | || | ||||| ||| || ||||| | Sbjct 94858 ACCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGC 94799 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||||| | || ||||||||||| || || ||||| |||| ||||||||| ||||| Sbjct 94798 GAGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGG 94739 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| ||||| || || ||| ||||| || | ||||| |||||||| Sbjct 94738 GATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 94679 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||||| || || || || || |||| ||||| | || ||||||||||| || Sbjct 94678 CTCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTGTT 94625 >seq9146 Length=70564 Score = 132 bits (146), Expect = 9e-26 Identities = 356/549 (65%), Gaps = 11/549 (2%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || || |||||| ||||| || ||||| | ||| || | |||||| |||||||| Sbjct 54237 CAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAA 54296 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||| | |||| || || ||||| || ||||| ||| |||| || ||||| Sbjct 54297 CCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAG 54356 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 ||||| || ||||| || || |||| |||| | | |||| | ||| ||| | Sbjct 54357 ATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAA----AGTTTGAGATCCATC 54412 Query 50004 -ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 50062 |||||| | || ||||| | |||||| || | | |||| ||| |||| || || Sbjct 54413 GATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCG 54472 Query 50063 AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACAT 50122 ||| | | || | | || | | | | | |||||| Sbjct 54473 AAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACAT 54532 Query 50123 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATA 50182 |||||||| | | || || || ||||||||| ||||| | || || || Sbjct 54533 CTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGAC 54592 Query 50183 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 50242 ||||| || || | |||||| | | | |||||| | || || ||||| ||||| || Sbjct 54593 TTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGC 54652 Query 50243 GAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 50302 ||| || || | ||||| ||| || || || |||| || |||| ||| |||||| Sbjct 54653 GAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAA-- 54710 Query 50303 TTCAAGATCGTT---TGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTT 50359 ||| | ||| ||||| |||||||||||| ||||| ||||||||| ||| ||| Sbjct 54711 -TCACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTT 54769 Query 50360 TTTATACAT 50368 || ||||| Sbjct 54770 CTTGTACAT 54778 >seq11704 Length=175292 Score = 127 bits (140), Expect = 4e-24 Identities = 125/161 (78%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 192293 TTTTTAGTTTAATAATA---CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTT 192349 |||| | |||||| ||| ||||||||||| | ||||| | ||| | ||||| ||||| Sbjct 63556 TTTTGACTTTAATCATAGTACCACCTCTAAGTCTCAATACAAGATGAAGAGTAGACTCTT 63497 Query 192350 TAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTA 192409 | |||||| ||||||| ||| |||| |||| || | ||||||||||||||| || | Sbjct 63496 TCTGGATATTGTAATCAGCTAAGGTTCTACCATCTTCAAGTTGTTTACCAGCAAATATAA 63437 Query 192410 ATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 || |||||||| |||||||| |||||||| || ||| || Sbjct 63436 GTCGTTGTTGATCTGGTGGTATACCTTCTTTGTCCTGTTTT 63396 >seq10330 Length=49715 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | | || ||||| | ||| | ||||| ||||||||||||| Sbjct 15913 ATACCACCACGAAGCCTGAGAACCAAATGAAGAGTTGATTCTTTCTGGATATTATAATCA 15972 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || || ||||| ||||||||||| | |||||| ||||| || Sbjct 15973 GCCAAAGTACGGCCGTCCTCTAACTGTTTTCCAGCAAAGATAAGTCTCTGCTGATCTGGA 16032 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || ||| || || || |||| || || ||| Sbjct 16033 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTAACGTTGTCGATAGTGTCAGAGCTTTCC 16092 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | ||||||| || |||||||| Sbjct 16093 ACCTCAAGGGTGATGGTCTTTCCGGTAAGAGTTTTAACGAAGATCTGCAT 16142 >seq9269 Length=281999 Score = 113 bits (124), Expect = 9e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| ||||||||||||| | || || | ||| | ||||| |||||| || || ||| Sbjct 49772 ATAGTACCACCTCTAAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGAATGTTGTAA 49713 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 |||| ||| |||| |||| || | ||| ||||||||||| || | || ||||||||| Sbjct 49712 TCAGCTAAAGTTCTACCATCTTCAAGTTGCTTACCAGCAAATATGAGCCTTTGTTGATCA 49653 Query 192424 GGTGGTATTCCTTCTTTATCTTGTA 192448 |||||||| |||||||| || |||| Sbjct 49652 GGTGGTATACCTTCTTTGTCCTGTA 49628 >seq8798 Length=192640 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | |||| || || || | || | || || ||| ||||||||| Sbjct 21326 ATACCACCTCTTAATCGTAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAATCA 21267 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || |||||||||||||| | ||||| || || ||| Sbjct 21266 GCCAAAGTCCGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGT 21207 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| ||| ||||| || | ||||| || Sbjct 21206 GGGATCCCTTCCTTGTCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 21147 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| ||||| ||||| | || |||| ||| |||||||| Sbjct 21146 ACCTCCAAAGTAATAGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 21097 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || || || | || | ||||| ||||| |||||| Sbjct 20870 ATACCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCA 20811 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | ||||||||||| ||||||||||| || || || || Sbjct 20810 GCCAAGGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGA 20751 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| || | ||| || || Sbjct 20750 GGAATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCG 20691 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | |||||| | || || ||||| Sbjct 20690 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 20641 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||||||||| ||||| | ||||||||| | ||| | || |||| || || || || || Sbjct 21554 ATACCACCTCTGAGACGAAGTACTAAATGGAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 21496 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||||| |||| || | || ||||| |||||||| | ||||| || || || Sbjct 21495 AGCGAGTGTTCTCCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGG 21436 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || || || || || || || || |||| || || || Sbjct 21435 TGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAGCTCTC 21376 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| || || | || || | ||| |||||||| Sbjct 21375 AACTTCCAAAGTGATTGTTTTGCCGGTAAGGGTCTTGACAAAAATCTGCAT 21325 >seq8726 Length=217380 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | ||||| | | || |||| ||| || || || ||||| ||||| Sbjct 142548 GATGTTGTAATCCGCGAGTGTTCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCT 142607 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| ||||| |||||||| || ||||| || || ||| ||||| || | Sbjct 142608 CTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGT 142667 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || |||| || || || || || |||| ||||| | || ||||| Sbjct 142668 GTCAGATGATTCAACCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTG 142727 Query 192534 CATTTTATT 192542 |||||| || Sbjct 142728 CATTTTTTT 142736 >seq11595 Length=173172 Score = 98.7 bits (108), Expect = 2e-15 Identities = 340/533 (64%), Gaps = 9/533 (2%) Strand=Plus/Plus Query 49839 TGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCT 49898 ||||| || ||||| | ||| || || || || ||||||||||| ||||| | |||| Sbjct 64883 TGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCT 64942 Query 49899 CTCTTTTTAAGCCAAAATATTGATGCAAAA-CTACTAGAAAAGAATATACCCTCGACACA 49957 | || || ||||| || || || |||||| |||| || ||||| ||||| || ||||| Sbjct 64943 CGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAAGATACCTTCAACACA 65001 Query 49958 CGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGC 50017 || || |||| |||| | | | || || |||| | |||| | || || Sbjct 65002 AGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATCCATCGA---TCCACGTCATCGC 65058 Query 50018 CCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCAttttt 50077 ||| | ||||| || | |||| ||| |||| ||||| ||| | | || | | Sbjct 65059 CCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCT 65118 Query 50078 ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAATGTACAGC 50137 || | | | | | |||||| |||||||| | | Sbjct 65119 CTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATT 65178 Query 50138 TTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACTTCGGAAAA 50197 || || || ||||| ||| ||||| | || || || || || || || | Sbjct 65179 CTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGTACATCTGACAT 65238 Query 50198 GAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAAC 50257 |||||| | | | |||||| | || || ||||| || || |||||||| || | || Sbjct 65239 GAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGAAGAAAGCGAGGAC 65298 Query 50258 GTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA--GATTCAAGATCGTTT 50315 || ||| ||||| || ||| || |||| ||| |||||| | || || | | Sbjct 65299 GTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGTCCG--TCTTGT 65356 Query 50316 GATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACAT 50368 |||| |||||||||||| ||||| || |||||| ||| ||| |||||||| Sbjct 65357 GATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTATACAT 65409 >seq11021 Length=502384 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| | || || | || |||| |||||| || || || || |||| Sbjct 217106 GATGTTGTAGTCAGCCAGAGTACGGCCGTCTTCCAGTTGTTTCCCGGCGAATATCAATCG 217047 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || |||||||||||||| || ||||| || || ||| ||||| || | Sbjct 217046 CTGCTGGTCCGGTGGTATTCCTTCCTTGTCTTGAATCTTCGCTTTGACATTGTCGATGGT 216987 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || || |||||||| || || || |||| ||||| | || ||||| Sbjct 216986 GTCAGAGGACTCAACCTCGAGAGTAATAGTCTTTCCCGTTAGGGTTTTCACGAAGATCTG 216927 Query 192534 CAT 192536 ||| Sbjct 216926 CAT 216924 >seq10212 Length=148016 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || ||||| | || | || || ||| || || |||| Sbjct 127837 ACCACCACGGAGACGGAGAACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGC 127778 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || | || || | ||||| || || || || || | || ||||| ||||| Sbjct 127777 GAGAGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTGG 127718 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || ||| ||| ||||| || | || || || || || Sbjct 127717 GATGCCTTCCTTGTCTTGGATCTTAGCTTTCACATTGTCGATGGTGTCAGAGGACTCAAC 127658 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || |||||||| |||| ||||| | || ||||||||||| Sbjct 127657 CTCAAGTGTGATTGTTTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 127607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984332231090250