Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9253 134 2e-26 seq11704 111 3e-19 seq10330 109 1e-18 seq8798 109 1e-18 seq11021 107 3e-18 seq9269 107 3e-18 seq9146 104 4e-17 seq8726 100 5e-16 seq10212 91.5 3e-13 seq11595 87.8 3e-12 >seq9253 Length=129212 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| || || | ||| ||||| | || | ||||| || || ||||| | Sbjct 94858 ACCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGC 94799 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || |||| ||||||||||| || || || || |||| |||||| || ||||| Sbjct 94798 GAGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGG 94739 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| ||||| || || ||| ||||| || || ||||| |||||||| Sbjct 94738 GATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 94679 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 ||||| || || || || || |||| ||||| | ||| ||||||||||| || Sbjct 94678 CTCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTGTT 94625 >seq11704 Length=175292 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| ||||||||||||||| ||||| | ||| | ||||| |||||| ||||| | Sbjct 63544 TCATAGTACCACCTCTAAGTCTCAATACAAGATGAAGAGTAGACTCTTTCTGGATATTGT 63485 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | ||| | || | || || | ||||||||||||||| || | || ||||| | Sbjct 63484 AATCAGCTAAGGTTCTACCATCTTCAAGTTGTTTACCAGCAAATATAAGTCGTTGTTGAT 63425 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983 | |||||||| |||||||| || ||| || Sbjct 63424 CTGGTGGTATACCTTCTTTGTCCTGTTTT 63396 >seq10330 Length=49715 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| | | || ||||| | ||| | ||||| ||||||||||| Sbjct 15913 ATACCACCACGAAGCCTGAGAACCAAATGAAGAGTTGATTCTTTCTGGATATTATAATCA 15972 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || |||| || || ||||| |||||||| || | |||||| || || || Sbjct 15973 GCCAAAGTACGGCCGTCCTCTAACTGTTTTCCAGCAAAGATAAGTCTCTGCTGATCTGGA 16032 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || ||| || || || ||||| || || ||| Sbjct 16033 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTAACGTTGTCGATAGTGTCAGAGCTTTCC 16092 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || | ||||||| ||| |||||||| Sbjct 16093 ACCTCAAGGGTGATGGTCTTTCCGGTAAGAGTTTTAACGAAGATCTGCAT 16142 >seq8798 Length=192640 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | ||| | || || || | || | ||||| |||||| ||||| Sbjct 20870 ATACCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCA 20811 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | ||||||||||| || |||||||| || ||||| || Sbjct 20810 GCCAAGGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGA 20751 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| || ||||| || || Sbjct 20750 GGAATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCG 20691 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||| | |||||| | ||| || ||||| Sbjct 20690 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 20641 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | ||||| || || || | || | || || || |||||||| Sbjct 21326 ATACCACCTCTTAATCGTAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAATCA 21267 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | || ||||||||||| || | ||||| ||||| ||| Sbjct 21266 GCCAAAGTCCGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGT 21207 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| ||||| || || ||||| || Sbjct 21206 GGGATCCCTTCCTTGTCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCA 21147 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| ||||| ||||| | || |||| || |||||||| Sbjct 21146 ACCTCCAAAGTAATAGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 21097 >seq11021 Length=502384 Score = 107 bits (118), Expect = 3e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| |||||| || || || || |||| ||| ||||| |||||||||||||| | Sbjct 217080 CGTCTTCCAGTTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGTATTCCTTCCT 217021 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || ||| ||||| || || || || || || || || ||||||| Sbjct 217020 TGTCTTGAATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAA 216961 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || || |||| ||||| | ||| |||||||| Sbjct 216960 TAGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 216924 >seq9269 Length=281999 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| ||||||||||||| | || || | ||| | ||||| |||||| ||| || | Sbjct 49774 TCATAGTACCACCTCTAAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGAATGTTGT 49715 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | ||||| || | || || | ||| ||||||||||| || | || ||||| | Sbjct 49714 AATCAGCTAAAGTTCTACCATCTTCAAGTTGCTTACCAGCAAATATGAGCCTTTGTTGAT 49655 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTA 171981 |||||||||| |||||||| || |||| Sbjct 49654 CAGGTGGTATACCTTCTTTGTCCTGTA 49628 >seq9146 Length=70564 Score = 104 bits (114), Expect = 4e-17 Identities = 337/534 (63%), Gaps = 11/534 (2%) Strand=Plus/Plus Query 39141 TGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCT 39200 ||||| |||||||| | ||| || | |||||| |||||||| || ||||| | ||| Sbjct 54252 TGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGGCATGAGACCT 54311 Query 39201 CTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACAC 39260 | || || ||||| || ||||| ||| |||| || ||||| ||||| || ||||| Sbjct 54312 CGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACACAA 54371 Query 39261 GCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA-ATCCAATTTATGGC 39319 || || |||| |||| | | |||| | ||| ||| | |||||| | || || Sbjct 54372 GCGAAAGCTACGATTCGTTCAGCAAA----AGTTTGAGATCCATCGATCCAAGTCATCGC 54427 Query 39320 CCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCATNNNN 39379 ||| | |||||| || | | |||| ||| |||| || || ||| | | || Sbjct 54428 CCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAGATGATCTCT 54487 Query 39380 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAATGTACAGC 39439 | |||||| |||||||| | | Sbjct 54488 CTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGAATGAATATT 54547 Query 39440 TTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACTTCGGAAAA 39499 || || || ||||||||| ||||| | || || || ||||| || || | Sbjct 54548 CTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAACATCTGACAT 54607 Query 39500 GAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAAC 39559 |||||| | | | |||||| | || || ||||| ||||| ||||| || || | ||| Sbjct 54608 GAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAAAAAGCGAGAAC 54667 Query 39560 ATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTT--- 39616 | ||| || || || |||| || |||| ||| |||||| ||| | ||| Sbjct 54668 GTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAA---TCACGTCCGTCATG 54724 Query 39617 TGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACAT 39670 ||||| |||||||||||| ||||| || |||||| ||| ||| || ||||| Sbjct 54725 TGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTACAT 54778 >seq8726 Length=217380 Score = 100 bits (110), Expect = 5e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| ||| || || || || || |||||||| || || ||||| |||||||| | Sbjct 142574 CGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCT 142633 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || ||| ||||| || || || || ||||| || |||| || | Sbjct 142634 TGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCAGATGATTCAACCTCTAAGGTTA 142693 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 | || || || |||| ||||| | ||| ||||||||||| || Sbjct 142694 TTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTTTT 142736 >seq10212 Length=148016 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||||| || || ||||| || | || || || ||||| || ||||| | Sbjct 127766 CGTCTTCAAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTGGGATGCCTTCCT 127707 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| ||| ||||| || || || || || || || || || || | Sbjct 127706 TGTCTTGGATCTTAGCTTTCACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGTGTGA 127647 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | |||||||| |||| ||||| | ||| ||||||||||| Sbjct 127646 TTGTTTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 127607 >seq11595 Length=173172 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 39141 TGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCT 39200 ||||| |||||||| | ||| || || || || ||||||||||| ||||| | |||| Sbjct 64883 TGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCT 64942 Query 39201 CTCTTTTTAAGCCAAAATATTGATGCAAAA-CTACTAGAAAAGAATATACCCTCCACACA 39259 | || || ||||| || || || |||||| |||| || ||||| ||||| || ||||| Sbjct 64943 CGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAAGATACCTTCAACACA 65001 Query 39260 CGCAAATGCTATTATTC 39276 || || |||| |||| Sbjct 65002 AGCGAAAGCTACGATTC 65018 Score = 84.2 bits (92), Expect = 4e-11 Identities = 172/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 39419 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC 39478 |||||| |||||||| | | || || || ||||| ||| ||||| | || || Sbjct 65158 ATACATCTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTC 65217 Query 39479 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 39538 || || || || || | |||||| | | | |||||| | || || ||||| || Sbjct 65218 CGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGA 65277 Query 39539 TGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 39598 || |||||||| || | || | ||| ||||| || ||| || |||| ||| || Sbjct 65278 AGCAGCGAAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGATTCTC 65337 Query 39599 CCAA--GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACG 39656 |||| | || || | ||||| |||||||||||| ||||| || |||||| || Sbjct 65338 CCAATCGCGTCCG--TCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCG 65395 Query 39657 GATTTTTTATACAT 39670 | ||| |||||||| Sbjct 65396 GCTTTCTTATACAT 65409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905003454147000