Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9060 141 3e-28 seq9133 125 2e-23 seq11467 107 6e-18 seq8589 107 6e-18 seq11110 105 2e-17 seq5306 102 2e-16 seq8766 98.7 3e-15 seq8482 89.7 2e-12 seq9704 86.0 2e-11 >seq9060 Length=178556 Score = 141 bits (156), Expect = 3e-28 Identities = 365/544 (67%), Gaps = 28/544 (5%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | ||||| ||| || ||||||||| |||| | || Sbjct 23310 CCAGCCACATCAGGCCTATCCACCGTGACCTGCCGATCAAACCTTCCAGGTCTCAATAGC 23251 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAA---CAATAGATTCGGTT 288933 || | || | | ||| | || || || ||||||||||||| || ||| ||| Sbjct 23250 GCAGAATCAAGAACATCTGGCCTATTCGTAGCTGCCAATACAATCACACCAGA----GTT 23195 Query 288934 TGCTTAAATCC-ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATT 288992 | ||| || |||||| ||||| | ||||||| |||||||| || |||||||| Sbjct 23194 ACCAGAAAACCCATCCATCTCAGTTAACAACTGATTAATCGTTTGTTCTCTCTCATCATT 23135 Query 288993 TGAACCTCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCA 289050 | |||| || || | |||||| | | | |||||||||||||| || ||| Sbjct 23134 TCCTCCTCC-----CATCCCA---GCTCCTCTCTGCCTCCCAACAGCATCAATCTCATCA 23083 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTC-GCAATTGCAAATAATTCTCTTACACGGGA 289109 ||||| | | ||| |||| ||| | || || | |||| || || || || | || Sbjct 23082 ATGAATACAATACAAGGAGC-TTTCGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGA 23024 Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAAT-GAATGTTA 289168 || || | ||||||| | | || ||||| || ||||| | || ||| ||||| || Sbjct 23023 CGCACCCACACCAACAAAAAGCTCAACAAACTCCGAAGCCGC-ACAAGAAAAGAATGGTA 22965 Query 289169 CATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCT 289228 || |||||| || || || || || |||| || ||||||||||| ||||||||||| Sbjct 22964 CACCTGCTTCTCCAGCCACAGCTCTAGCCAATAGAGTCTTACCTGTACCAGGTGGTCCAA 22905 Query 289229 CTAATAGAACTCCCTTTGGTACTTTTGC-CCCA--GCAGACTTATATTTCTCAGGGCTCT 289285 | | || | ||| || || | || || |||| |||| |||| || ||||| ||| Sbjct 22904 CAAGTAAACATCCTTTAGGAATCTTAGCACCCAATGCAG---TATACTTATCAGGATTCT 22848 Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAG 289345 | || || || |||| ||||| | ||| || || | |||| || || ||||| | Sbjct 22847 TCAAGAAATCAACAACTTCCTGTAACTCAAGCTTAGCTTGATCAGCACCAGCAACATCTG 22788 Query 289346 CAAA 289349 ||| Sbjct 22787 TAAA 22784 >seq9133 Length=41873 Score = 125 bits (138), Expect = 2e-23 Identities = 285/419 (68%), Gaps = 16/419 (4%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| |||||||| || |||||||| ||| Sbjct 23983 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCTCTCTCATCATTACCACC 23924 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 || || | | |||||| ||| | || ||||||||||| || ||||| || Sbjct 23923 TCC-----CATTCCA---GCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAAC 23872 Query 289057 ATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | ||| |||| ||| | | |||| | |||| || || || || | || || || Sbjct 23871 ACAATACAAGGAG-CTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACC 23813 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTG-AATGAATGTTACATTTG 289174 || ||||||| | | || ||||| || ||||| | || || || ||| | |||| | Sbjct 23812 AACACCAACAAAAAGCTCAACAAACTCCGAAGCAG-CACATGAAAAGAACGGTACACCAG 23754 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 ||||||| || || || || || | ||| ||||| ||||| || ||||| || | || | Sbjct 23753 CTTCGCCAGCAACAGCTCTAGCTAAAAGCGTCTTCCCTGTACCCGGTGGACCAACCAACA 23694 Query 289235 GAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 ||| ||||| |||| ||||| || || |||| || ||||| |||| | || Sbjct 23693 -AACAACCTTTAGGTATCTTTGCACCTAAAGCTGTATACTTATCAGGATTCTTCAGGAAA 23635 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||| ||| | | ||| ||| || | |||| || || |||||| |||| || Sbjct 23634 TCAACAACTTCTTGTAACTCAAGTTTAGCTTGATCAGCACCAGCAACATCACCAAATGT 23576 >seq11467 Length=72189 Score = 107 bits (118), Expect = 6e-18 Identities = 308/461 (67%), Gaps = 22/461 (5%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| ||||||| | | ||||| | || | | ||| | ||| || ||||| || Sbjct 11762 ATCAAATCTACCAGGTCTAAGCAATGCAGAATCAAGAACATCTGGTCTATTCGTTGCAGC 11703 Query 288912 CAATACAACAATAGATTCGG--TTTGCTTA-AATCCATCCATACTTGTTAAAATTTGATT 288968 ||| |||| || | | | || | | || |||||||| || || | ||||| Sbjct 11702 CAACACAATAACAC---CAGAATTACCAGAGAACCCATCCATCTCCGTCAATAGCTGATT 11646 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || ||||| || |||||||||||| ||||| || | | |||||| ||| | Sbjct 11645 AATCGTTTGCTCTCTTTCATCATTTCCACCTCC-----CATTCCA---GCTCCTCTTTGT 11594 Query 289029 A--CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTC-TCGCAAT 289085 || ||||||||||| || ||||| || | | ||| |||| ||| | | |||| | Sbjct 11593 CTTCCCACAGCATCAATCTCATCAATAAACACAATACAAGGAG-CTTTCGACTTCGCTTT 11535 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||| || || || || | || || |||| |||||| | | || ||||| ||||| Sbjct 11534 CTCAAACAAATCCCTAACCCTAGAAGCACCAACTCCAACAAAAAGCTCAACAAACTCAGA 11475 Query 289146 AGCGGATACTTG-AATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 ||| | || || || ||| | ||| ||||| || || || || || || | || | Sbjct 11474 AGCAG-CACATGAAAAGAACGGTACTCCGGCTTCACCAGCAACAGCTCTAGCTAATAGAG 11416 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCA 289263 |||| ||||| || ||||| || |||||| ||| ||||| |||| || || || | Sbjct 11415 TCTTTCCTGTACCTGGTGGACCAACTAATA-AACAACCTTTAGGTATCTTAGCTCCTAAA 11357 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 | |||| || ||||| | || || || || |||| ||| Sbjct 11356 GCTGTATACTTATCAGGATTTTTCAAGAAATCAACAACTTC 11316 >seq8589 Length=45551 Score = 107 bits (118), Expect = 6e-18 Identities = 308/461 (67%), Gaps = 22/461 (5%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| ||||||| | | ||||| | || | | ||| | ||| || ||||| || Sbjct 11762 ATCAAATCTACCAGGTCTAAGCAATGCAGAATCAAGAACATCTGGTCTATTCGTTGCAGC 11703 Query 288912 CAATACAACAATAGATTCGG--TTTGCTTA-AATCCATCCATACTTGTTAAAATTTGATT 288968 ||| |||| || | | | || | | || |||||||| || || | ||||| Sbjct 11702 CAACACAATAACAC---CAGAATTACCAGAGAACCCATCCATCTCCGTCAATAGCTGATT 11646 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || ||||| || |||||||||||| ||||| || | | |||||| ||| | Sbjct 11645 AATCGTTTGCTCTCTTTCATCATTTCCACCTCC-----CATTCCA---GCTCCTCTTTGT 11594 Query 289029 A--CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTC-TCGCAAT 289085 || ||||||||||| || ||||| || | | ||| |||| ||| | | |||| | Sbjct 11593 CTTCCCACAGCATCAATCTCATCAATAAACACAATACAAGGAG-CTTTCGACTTCGCTTT 11535 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||| || || || || | || || |||| |||||| | | || ||||| ||||| Sbjct 11534 CTCAAACAAATCCCTAACCCTAGAAGCACCAACTCCAACAAAAAGCTCAACAAACTCAGA 11475 Query 289146 AGCGGATACTTG-AATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 ||| | || || || ||| | ||| ||||| || || || || || || | || | Sbjct 11474 AGCAG-CACATGAAAAGAACGGTACTCCGGCTTCACCAGCAACAGCTCTAGCTAATAGAG 11416 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCA 289263 |||| ||||| || ||||| || |||||| ||| ||||| |||| || || || | Sbjct 11415 TCTTTCCTGTACCTGGTGGACCAACTAATA-AACAACCTTTAGGTATCTTAGCTCCTAAA 11357 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 | |||| || ||||| | || || || || |||| ||| Sbjct 11356 GCTGTATACTTATCAGGATTTTTCAAGAAATCAACAACTTC 11316 >seq11110 Length=291012 Score = 105 bits (116), Expect = 2e-17 Identities = 172/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| || || || ||||| |||||||| | |||||| |||| | Sbjct 226130 TACCCTTTCTCTTGCCTCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCA 226189 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| |||| ||||||||| || || ||||| || || ||||| | ||||||| | Sbjct 226190 ACATTGGAACAATACCATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCAC 226249 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | |||||||| | | ||||||||||| | |||| || ||| || || | Sbjct 226250 GGATATTATGAACAGAAACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTT 226309 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 | | |||| | |||| || ||||| |||||||| ||| | | |||| | || || Sbjct 226310 TGAGTGTATCGTAAATGCCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTAC 226369 Query 156286 TTAATTG 156292 |||| || Sbjct 226370 TTAACTG 226376 >seq5306 Length=3186 Score = 102 bits (112), Expect = 2e-16 Identities = 315/475 (66%), Gaps = 28/475 (6%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946 || || |||||||| ||||| || | ||| | || | | | ||| ||| ||| |||| Sbjct 812 ATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACACCAGT--GTTACCTTCAAAACCAT 755 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| |||| | ||||| ||||| ||||| ||||||||||| ||||| Sbjct 754 CCATCTCAGTTAGGAGCTGATTGAGTGTCTGTTCTCTTTCATCATT---ACCTC------ 704 Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 || || | || | |||| ||| ||||||| ||||||||||| |||| || | | Sbjct 703 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACCGCATCAATTTCATCAACAAACACAATG 645 Query 289063 CACGGAGAATT----TTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 || |||| || ||| || | ||| ||| | || | || | || || |||| Sbjct 644 CAAGGAGCGTTCTCCTTGGCTTTC--TTGAAAAGA--TCGCGGACTCTTGAAGCACCAAC 589 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||| ||| |||| || ||||| |||||| | || | | || | ||| | ||| |||| Sbjct 588 ACCGACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGCACACCAGCTT 530 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || | || | |||| ||| || ||||| || ||||| || || | |||| Sbjct 529 CACCAGCAATGGCTTTTGCCAAAAGAGTTTTACCAGTACCAGGAGGACCAATAAGGAGAA 470 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 | || || || | || || ||| ||| | || ||||||| |||| | ||| || | Sbjct 469 CACCTTTCGGAATCTTGGCACCAACAGCAGTGAATCTCTCAGGTTTCTTCAGAAACTCAA 410 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | |||| | || | || || |||||| ||| || |||||| |||| || Sbjct 409 CCACTTCCATGAAATCTTGCTTAGCTTCATCAACTCCAGCAACATCATCAAACGT 355 >seq8766 Length=69736 Score = 98.7 bits (108), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| || ||||| ||||| |||||||| | |||||| |||| | Sbjct 54226 TACCCTTTCTCTTGCCTCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACACGCA 54285 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| || | ||||||||| || || ||||| || || ||||| | |||| || | Sbjct 54286 ACATTGGGACAATACCATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCTC 54345 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| |||||||| | ||||||||||| | |||| || ||| ||||||| Sbjct 54346 GAATATTATGAACTGAAACACCAATACCACCAGCAGATTTGCTTATAACAGCACATTCCT 54405 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | || | |||| || ||||| |||||||| ||| Sbjct 54406 TAAGTGTTTCATAAATGCCCTCAATGCTATCATCTTTCAT 54445 Score = 96.9 bits (106), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 156286 TTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACT 156345 ||| |||||| | ||| |||||||| ||||| || ||||| | ||||||| | || | Sbjct 54559 TTACTTGAGGACTTGGAGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATC 54618 Query 156346 TATTAGACATATAATCGTATGTCTCCTTA--ATCTTCTCAAGATTAGACCCGTGAATACA 156403 | | |||||| ||| ||| || | | | |||| | || | | |||||||| Sbjct 54619 TCTGAGACATCAAATGGTAAGTTTTGATTGCAGATTCT--ATATCATCCTTGTGAATACC 54676 Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463 | || ||||||||| ||| || ||||| | || |||| || | ||| || Sbjct 54677 AACAGCAACCCTCATCAGCATGTGTTGAGGTCTTTCAACAACTGTCCCTTGGATTTTCAA 54736 Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 |||||||| | ||| |||||||||||||| ||| ||||| | ||||||||||| Sbjct 54737 AAGGTATGATCTTTCAAGAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGT 54792 >seq8482 Length=107640 Score = 89.7 bits (98), Expect = 2e-12 Identities = 180/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCG-TCATATA 251461 |||||| || ||||| | ||||||||| || || |||||||| | | | ||| | | Sbjct 27196 GGCGATGAGCCCACAGACTTCACACACATGTACCCTATAAGCATC-GCTCTGATCAAACA 27254 Query 251462 GCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 ||| | || ||| ||| ||||| |||| |||||| |||||||| |||||||| | Sbjct 27255 GCCTCTCTTTCAAAAAGTGAGCAGCACCATGTGCAATCATGCAATCACGTTCCATTTCTC 27314 Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA 251581 | ||||| ||||||||||| || | | || || || || || | ||||| | || Sbjct 27315 CAAAACGGAGACCACCATCACGTGATCGCCCTTCAGCTGGTTGCCTTGTGAGGATTTGCA 27374 Query 251582 TAGGACCGATGGAGC-GGCTA-TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTA 251639 |||||| | | | || | || ||| |||| ||||||||||| | || ||||| Sbjct 27375 CAGGACC--TCGTCCACGCGAGTGAATCTTGTCATCAACCATATGCTTCAATCGTTGGTA 27432 Query 251640 GAATGCGGGACCGATGAAGAT 251660 ||| || || | ||| || Sbjct 27433 ATATGTTGGTCCAAGGAATAT 27453 >seq9704 Length=119557 Score = 86.0 bits (94), Expect = 2e-11 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 233261 AAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGA 233320 |||||| ||| |||||| || |||||||||||||||||||||||||| |||| ||| || Sbjct 93005 AAAAAT-TTGCAGCACCATGTGCAATCATACAATCACGTTCCATTTCTCCAAAACGGAGT 92947 Query 233321 CCACCATCA 233329 ||||||||| Sbjct 92946 CCACCATCA 92938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471596682477955