Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq10724 163 3e-35 seq8685 125 8e-24 seq8998 105 7e-18 seq9882 102 9e-17 >seq10724 Length=33194 Score = 163 bits (180), Expect = 3e-35 Identities = 192/256 (75%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 158708 ACTCCTGAGGGAGAAACTGTCGTCCAATGTGAAGAGGATCAATACATTCTAGACGCAGCA 158767 || ||||| |||||| | || |||||||||| ||| || |||| || ||||| Sbjct 30696 ACACCTGAAGGAGAACAAGAGGTTGAATGTGAAGAAGATGTTTATGTTCTTGATGCAGCT 30755 Query 158768 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158827 |||||||| ||| ||||| | |||||| |||||||||||| ||||||| ||||| Sbjct 30756 GAAGAAGCTGGAATTGATTTACCTTACTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCT 30815 Query 158828 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATC--AGTCGTTCTTAGACGATGATC 158885 |||||| |||| ||||| |||||||||| || | ||| ||||| || ||||||| Sbjct 30816 GGTAAAGTTGTGTCTGGTTCTGTTGATCAATCAGACCAAAGT-TTTCTT-GATGATGATC 30873 Query 158886 AGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGATTGTGTTGTTG 158945 |||||| | |||||||||||| || |||| ||| ||||| || |||||| |||| || Sbjct 30874 AGATTGGTGAAGGATTTGTTCTCACTTGTGCAGCTTATCCTACTTCTGATGTTGTTATTA 30933 Query 158946 TTACTGATCAAGAGGA 158961 ||| | ||||| || Sbjct 30934 AAACTCACCAAGAAGA 30949 >seq8685 Length=252540 Score = 125 bits (138), Expect = 8e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 158740 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTG 158799 ||| ||||| || || | || ||||| ||||||||||||||||| | ||| ||||| Sbjct 168758 AGATGATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTG 168817 Query 158800 TCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAG 158859 | | |||||||| || ||| ||||||| ||||| |||||||| || ||||||||| Sbjct 168818 TAGAGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTC 168877 Query 158860 TGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCA-GGATTTGTTCTTACGTGTGTAG 158918 ||| ||||| | || |||| ||| ||| || | || | |||| | || ||||| | Sbjct 168878 GGATGGTTCGTTTCTTGATGATGGTCACTTTG-AGAATGGTTATGTTTTGACTTGTGTGG 168936 Query 158919 CATATCCAACATCTGATTGTGTTGTT 158944 | |||||| |||||||||||| || Sbjct 168937 CTTATCCACAGTCTGATTGTGTTATT 168962 >seq8998 Length=67453 Score = 105 bits (116), Expect = 7e-18 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 158736 GTGA-AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 158794 |||| ||| || |||||||| | || ||||| ||||||||||||||||| | |||| Sbjct 36708 GTGACAGATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTAC 36767 Query 158795 TCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 158854 ||||| | ||||||||||| || | ||||| ||||| ||||| | || |||||| Sbjct 36768 TCTTGCAGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGAC 36827 Query 158855 CAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCA-GGATTTGTTCTTACGTG 158913 || |||| ||||| | || ||| |||| ||| | | || | ||| | || || Sbjct 36828 CAATCTGATGGTTCGTTTCTTGATGATAATCA-TTTGGACAATGGTTATGTGTTGACTTG 36886 Query 158914 TGTAGCATATCCAACATCTGATTGTGT 158940 ||| || || |||| ||||||||||| Sbjct 36887 TGTGGCTTACCCAAAGTCTGATTGTGT 36913 >seq9882 Length=79551 Score = 102 bits (112), Expect = 9e-17 Identities = 179/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 158040 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 158099 ||| |||| || | | |||| ||||| ||| | || ||| |||||||||| || || | Sbjct 46244 ATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGC 46185 Query 158100 ACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTC 158159 ||||| | ||||| ||||| || || ||| | ||||| ||||| |||||| | || || | Sbjct 46184 ACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCC 46125 Query 158160 TTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAA 158218 | || || |||||| | | | || ||||| | | | || | ||||| || ||| Sbjct 46124 TATTTAGTG-TATGCATAGTTTTTTTGTAACTTC-TAGTTTGATCAGGGAAACCACAGAA 46067 Query 158219 ACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTC 158278 | || || || | ||||||| ||||||||||| || | || || ||| | || Sbjct 46066 AATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTA 46007 Query 158279 GCAGCACATGGCTACTT 158295 || || ||||| || || Sbjct 46006 GCTGCTCATGGTTATTT 45990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548294097423800