Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq8473 123 3e-23 seq9882 116 4e-21 seq10724 113 5e-20 seq8998 113 5e-20 seq8685 102 9e-17 seq9543 82.4 8e-11 >seq8473 Length=72639 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 |||||||||||| || || | ||||| ||||| ||| ||| ||||| || ||| Sbjct 6452 TGTGAAGATGACGTTTATGTCCTTGATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTAC 6393 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 || || ||||||||| | || || |||||||||||| ||||| |||| | |||||| Sbjct 6392 TCATGCCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGAT 6333 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168 || ||||||| ||| | |||||||| || || | ||||| || || || ||| Sbjct 6332 CAATCTGACCAAAGTTTCCTTGATGATGAACAAATGGGTGAAGGATATGTTCTCACTTGT 6273 Query 152169 GTTGCATATCCAACTTCTGATGT 152191 | ||| ||||| ||||||||||| Sbjct 6272 GCTGCTTATCCTACTTCTGATGT 6250 >seq9882 Length=79551 Score = 116 bits (128), Expect = 4e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 151328 TTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATG 151387 |||| || ||| |||| ||||| || ||||||||| |||| || ||||| || || ||| Sbjct 46215 TTCAGCTTTATGATTGTATTCCAGGCTGAGCACAACTTTCTTATACACCCATTTCACATG 46156 Query 151388 CTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTT 151447 | ||||| |||||||| ||| | || || || || | | ||||| ||| | | || Sbjct 46155 TTAGGTGTAGCTGGTGTATTCAGCGGCTCCCTATT-TAGTGTATGCATAGTTTTTTTGTA 46097 Query 151448 ACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTC 151507 |||||| || | | || ||||| ||||| || || || | ||||||| ||| Sbjct 46096 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACATATTC 46037 Query 151508 GGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 ||||||||| || | || |||||| | || || || || ||||| |||| Sbjct 46036 GGTCAAGAAAAATAAACATACAACTTTGTAGCTGCTCATGGTTATTTTG 45988 >seq10724 Length=33194 Score = 113 bits (124), Expect = 5e-20 Identities = 136/184 (74%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 152008 TCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGTGCAT 152067 ||||| |||| ||||| ||| ||| ||||| | ||||| |||||||||||| | | Sbjct 30743 TCTTG-ATGCAGCTGAAGAAGCTGGAATTGATTTACCTTACTCATGTCGTGCTGGTTCTT 30801 Query 152068 GTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCATTCT 152127 | || |||||||||||| ||||| |||| | |||||||| |||||| || Sbjct 30802 GCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCAGACCAAAGTTTTC 30861 Query 152128 TGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACTTCTG 152187 | |||||||| ||||||| |||||| || || || |||| || ||||| ||||||| Sbjct 30862 TTGATGATGATCAGATTGGTGAAGGATTTGTTCTCACTTGTGCAGCTTATCCTACTTCTG 30921 Query 152188 ATGT 152191 |||| Sbjct 30922 ATGT 30925 >seq8998 Length=67453 Score = 113 bits (124), Expect = 5e-20 Identities = 165/229 (72%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 151966 CTGAAGGTGAC-AAAACTATCACTTG---TGA-AGATGACCAGTACATCTTGGATGCTGC 152020 |||||||||| ||||| | | ||| ||| ||||||||| ||||| |||||||| || Sbjct 36682 CTGAAGGTGAAGAAAACGA--ATTTGAAGTGACAGATGACCAATACATATTGGATGCAGC 36739 Query 152021 TGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGC 152080 ||| ||| ||||||||| | |||||||| | |||||||| ||||| ||||||| Sbjct 36740 TGAAGAAGCAGGAGTTGACTTACCTTACTCTTGCAGAGCTGGTGCTTGTTCAACTTGTGC 36799 Query 152081 TGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCATTCTTGGATGATGACCA 152140 |||||||||||||| ||| ||||| || ||| || || | |||||| | || Sbjct 36800 TGGTAAGATTGTGACAGGTGATGTTGACCAATCTGATGGTTCGTTTCTTGATGATAATCA 36859 Query 152141 GATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACTTCTGAT 152189 | || || | ||| |||| ||||| || || |||| |||||| Sbjct 36860 TTTGGACAATGGTTATGTGTTGACTTGTGTGGCTTACCCAAAGTCTGAT 36908 >seq8685 Length=252540 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 |||||| ||||| || |||||||| ||||| ||| ||||||||| | || ||||| Sbjct 168758 AGATGATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTG 168817 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113 | | |||||||| ||||| | ||||||||||||||||| ||| |||||||||| Sbjct 168818 TAGAGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTC 168877 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGC 152173 || || || | ||||||| || |||| || | || |||| ||||| || Sbjct 168878 GGATGGTTCGTTTCTTGATGATGGTCACTTTGAGAATGGTTATGTTTTGACTTGTGTGGC 168937 Query 152174 ATATCCAACTTCTGAT 152189 |||||| |||||| Sbjct 168938 TTATCCACAGTCTGAT 168953 >seq9543 Length=59296 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151988 TTGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTA 152047 ||| ||||| ||| |||| || | || || |||||||| ||| | ||| || || Sbjct 1203 TTGCGAAGAAGACGTGTACGTCCTTGACGCCGCTGAGGACGCTGGAATCGATTTGCCGTA 1262 Query 152048 CTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGA 152107 ||| || |||||||| | || || ||| || || || | | ||| | |||| Sbjct 1263 CTCATGCCGTGCTGGATCTTGCTCAAGTTGCGCCGGGAAAGTCATCTCTGGCTCCATTGA 1322 Query 152108 TCAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTG 152167 ||| ||||| || || |||||||||||||| || ||||| || | ||||| Sbjct 1323 CCAGTCGGACCAGAGCTTTTTAGATGATGACCAGATGAAAGAAGGATATGTCTTAACCTG 1382 Query 152168 TGTTGCATATCCAACTTCTGATGTC 152192 ||| || || ||||||||||||||| Sbjct 1383 TGTGGCTTACCCAACTTCTGATGTC 1407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549541914669800