Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11595 120 4e-21 seq9146 107 2e-17 >seq11595 Length=173172 Score = 120 bits (132), Expect = 4e-21 Identities = 192/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || || ||||| || ||||| ||||| |||||||| || | | |||| | ||||| Sbjct 65168 GAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGT 65227 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || || ||||| ||||| || || || ||||| Sbjct 65228 ACATCTGACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGAAG 65287 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||||||| ||||||||||| || ||| ||||| | || | |||| | | Sbjct 65288 AAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGT 65347 Query 869813 GTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | | | || || || || || || ||||||| ||| || ||||| || || || Sbjct 65348 CCGTCTTGTGAT-AGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTATA 65406 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||||||| | || ||||| | || ||||| Sbjct 65407 CATCTCCCAGATCTGTGGGTAGTGAATTGGGAA 65439 >seq9146 Length=70564 Score = 107 bits (118), Expect = 2e-17 Identities = 177/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || || ||||| || ||||| || || |||||||| || | | |||| | ||||| Sbjct 54537 GAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGA 54596 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || || ||||| ||||| || || || |||||| Sbjct 54597 ACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAA 54656 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || ||||| ||||| ||||| || || ||||| | || | |||| | ||| Sbjct 54657 AAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAAT-CACG 54715 Query 869813 -GTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||| | | | || || || || ||||||||||||| || || ||||| || |||| Sbjct 54716 TCCGTCATGTGAT-AGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGT 54774 Query 869871 ACATCTCCCA 869880 |||||||||| Sbjct 54775 ACATCTCCCA 54784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106177812238655