Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq8798 100 2e-16 seq10330 91.5 1e-13 seq8726 87.8 1e-12 seq11704 84.2 2e-11 >seq8798 Length=192640 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| ||||| || ||||| || || ||| | || ||| Sbjct 21553 ATGCAAATATTTGTCAAGACTTTGACAGGCAAGACAATAACCTTAGAGGTTGAGAGCTCG 21612 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| ||||| | || ||| ||| Sbjct 21613 GACACTATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGACCAA 21672 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | || || |||||||| ||||||| | ||| |||| ||||||||| Sbjct 21673 CAGAGACTCATCTTCGCTGGGAAACAGCTAGAGGATGGTCGGACATTGGCTGATTACAAC 21732 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || || || ||||| || | ||| |||| | | || || || ||||| Sbjct 21733 ATCCAGAAGGAATCGACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGAAA 21782 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-G 110324 ||| | |||||||| || || ||||| | || ||||| ||||| || |||| || | Sbjct 20635 TTTCAGATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTCGAG 20694 Query 110325 AGC-CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 ||| |||| ||| ||| | | || || |||||| || || |||||| | || Sbjct 20695 AGCTCTGA---TACCATCGACAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCT 20751 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 || || |||||| | || | || ||||||||||| || |||| | | || |||| Sbjct 20752 CCAGACCAGCAAAGATTAATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCT 20811 Query 110444 GATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| ||||| |||||||| || ||||| |||| Sbjct 20812 GATTACAATATTCAGAAAGAATCAACCCTGCACTTGGT 20849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || |||||||| || | ||||||||||| || || | ||| ||| || Sbjct 21325 ATGCAGATTTTTGTCAAGACCCTTACCGGCAAAACAATCACTTTGGAAGTTGAGAGCTCT 21384 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || || ||||| ||||| ||||| | || ||| Sbjct 21385 GAC---ACTATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGAC 21441 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||| | ||| ||||| ||||| ||||||| |||||| | || || ||| Sbjct 21442 CAGCAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGGAGAACACTCGCTGACTAC 21501 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||||||||| || || || Sbjct 21502 AACATTCAAAAGGAGTCCAC 21521 >seq10330 Length=49715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||| | ||||| || || || |||||| | ||||| || ||||| ||| | || ||| Sbjct 16149 ATTTCAGATGCAGATCTTCGTTAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTGGA 16090 Query 110326 --GC-CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 || ||||| ||| ||| | | || || ||||| |||||||||||| | || Sbjct 16089 AAGCTCTGAC---ACTATCGACAACGTTAAGGCTAAGATCCAGGACAAAGAAGGCATTCC 16033 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 ||||| || |||||||| | ||| || |||||| | ||||| | | | || |||| Sbjct 16032 TCCAGATCAGCAGAGACTTATCTTTGCTGGAAAACAGTTAGAGGACGGCCGTACTTTGGC 15973 Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469 ||||| || || || |||||||| || Sbjct 15972 TGATTATAATATCCAGAAAGAATCAAC 15946 >seq8726 Length=217380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || ||||| |||| || || || || ||| | || || | Sbjct 142733 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCA 142674 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || ||| |||||| ||||| ||||| | || |||| Sbjct 142673 TCTGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGAT 142614 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||| | || | || || || || ||||| || | |||||| | ||||||||| Sbjct 142613 CAGCAGAGATTGATCTTCGCCGGAAAGCAACTGGAAGACGGAAGAACACTCGCGGATTAC 142554 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| ||||| ||||| ||| | ||| ||||| Sbjct 142553 AACATCCAAAAGGAATCGACGCTTCACTTGGTG 142521 >seq11704 Length=175292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || ||||||||| ||||||| | ||| |||||||| || || Sbjct 63403 GACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTTGAA 63462 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||| | || |||||||| || || ||||| ||||| | || | || || Sbjct 63463 GATGGTAGAACCTTAGCTGATTACAATATCCAGAAAGAGTCTACTCTTCATCTTGTATTG 63522 Query 110486 AGACTGCGAGGGGG 110499 ||||| |||| || Sbjct 63523 AGACTTAGAGGTGG 63536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412782655895495