Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9146 96.9 5e-14 seq11595 87.8 3e-11 >seq9146 Length=70564 Score = 96.9 bits (106), Expect = 5e-14 Identities = 217/324 (67%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| ||| ||| | ||| || | |||| | || |||||||| || || || Sbjct 54258 CCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAA-CCAGGCATGAGACCTCGTTT 54316 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||| | ||| || || || ||||| ||||| || || || || || Sbjct 54317 CTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAA 54376 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| || || |||||||| | || || |||||| |||||||||| Sbjct 54377 AGCTACGATTCGTTCAGCAAAAGTTTGAGATCCATC------GATCCAAGTCATCGCCCA 54430 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | ||| || ||| | || | || | || || || ||||||||||| || || |||| Sbjct 54431 TTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAGATGATCTCTCTC 54490 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || |||| || || |||| ||||| || |||| || || || || || Sbjct 54491 TTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTC 54550 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 || ||||| || || || ||||| Sbjct 54551 AATCGCGATTTGAAATCCGTAAAA 54574 >seq11595 Length=173172 Score = 87.8 bits (96), Expect = 3e-11 Identities = 215/324 (66%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| ||| ||| || ||||| | |||| | || |||||||| || || || Sbjct 64889 CCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT-CCAGGCATGAGTCCTCGTTT 64947 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||| | || || || || ||||| ||||| || || || || || Sbjct 64948 CTTTAGCCAGAAGATAGAGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAA 65007 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| || || || || || | || || ||||||| |||||||||| Sbjct 65008 AGCTACGATTCGTTCAGCGAAGGTTTGAGATCCATC------GATCCACGTCATCGCCCA 65061 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || || || ||| || | || | || || || || |||||||| || || |||| Sbjct 65062 CTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTC 65121 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || |||| || || |||| ||||| || |||| || || || || || Sbjct 65122 TTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTC 65181 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 || ||||| ||||| || ||||| Sbjct 65182 AATCGCGATTTGGAATCCGTAAAA 65205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915000222017885