Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq9253 111 2e-19 seq10330 96.9 5e-15 seq9269 96.9 5e-15 seq8798 96.9 5e-15 seq8726 84.2 3e-11 >seq9253 Length=129212 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| |||| || || ||||| || | || |||||| ||| | Sbjct 94632 TGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACACTAGAGGTAGAATCATCA- 94690 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| ||| || || ||| |||||||| || ||||| |||||| Sbjct 94691 GACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAAGAAGGAATCCCACCGGATCAA 94750 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || || || || |||||||| || || |||||| | | ||||| || Sbjct 94751 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGACGGTAGAACACTCGCCGATTACAAC 94810 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || |||||||| || | ||||| ||| | || ||||||||||| Sbjct 94811 ATCCAGAAAGAATCAACGCTTCATTTGGTACTCCGTCTAAGAGGAGGT 94858 >seq10330 Length=49715 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || ||||| || || || |||| || ||| | Sbjct 16141 TGCAGATCTTCGTTAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCTG 16082 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | || || || ||| || || |||||||||||||| || ||||| | Sbjct 16081 ACACTATCGACAACGTTAAGGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAGC 16022 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || ||||| ||||| || | || || | |||||||||| Sbjct 16021 AGAGACTTATCTTTGCTGGAAAACAGTTAGAGGACGGCCGTACTTTGGCTGATTATAATA 15962 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| | ||||| || Sbjct 15961 TCCAGAAAGAATCAACTCTTCATTTGGT 15934 >seq9269 Length=281999 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 |||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||| | || ||| Sbjct 49636 AAAGAAGGTATACCACCTGATCAACAAAGGCTCATATTTGCTGGTAAGCAACTTGAAGAT 49695 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 |||||| ||| | ||||| || || || ||||| || ||| | ||| | || || | Sbjct 49696 GGTAGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACTCTTCATCTTGTCTTGAGG 49755 Query 146247 TTAAGAGGAGGTA 146259 | ||||| |||| Sbjct 49756 CTTAGAGGTGGTA 49768 >seq8798 Length=192640 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| | || || || || || ||| | || || || | Sbjct 20642 TGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCTG 20701 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || || || ||| ||| ||||||||||| || || || | Sbjct 20702 ATACCATCGACAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAGC 20761 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || |||||||| | || ||| | || || | ||||| |||| Sbjct 20762 AAAGATTAATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACAATA 20821 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | || || || | ||||||||||| |||| Sbjct 20822 TTCAGAAAGAATCAACCCTGCACTTGGTTCTTCGATTAAGAGGTGGTA 20869 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | || || | || |||||||| |||||| | || || || | | | Sbjct 21098 TGCAGATCTTTGTTAAGACCCTTACTGGAAAAACTATTACTTTGGAGGTTGAGAGCTCA- 21156 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| ||| || || || ||||| || ||||| || || Sbjct 21157 GACACCATTGACAATGTCAAAGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGACCAG 21216 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || ||||| ||||| || |||| ||| | | || || | |||||||| Sbjct 21217 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGGACTTTGGCTGATTATAAC 21276 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || || ||||| || | || || || ||||||||||||| |||| Sbjct 21277 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTACGATTAAGAGGTGGTA 21325 >seq8726 Length=217380 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| |||| || || ||||| || | || || ||| ||| Sbjct 142729 TGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCATCT- 142671 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| ||| || || ||| || ||||| || ||||| ||||| Sbjct 142670 GACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAG 142611 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || || || || || ||| | || || ||||| | | ||||| || Sbjct 142610 CAGAGATTGATCTTCGCCGGAAAGCAACTGGAAGACGGAAGAACACTCGCGGATTACAAC 142551 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || ||||| |||||||| | || || || | || |||||||||||| Sbjct 142550 ATCCAAAAGGAATCGACGCTTCACTTGGTGCTCCGTTTAAGAGGAGGT 142503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786051275757800