Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq10724 150 2e-31 seq8685 125 8e-24 seq9882 120 3e-22 seq8998 105 7e-18 >seq10724 Length=33194 Score = 150 bits (166), Expect = 2e-31 Identities = 188/255 (74%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 158180 ACTCCTGAGGGAGAAACAGTTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 158239 || ||||| |||||| || | | |||||||| ||| || |||| || ||||| Sbjct 30696 ACACCTGAAGGAGAACAAGAGGTTGAATGTGAAGAAGATGTTTATGTTCTTGATGCAGCT 30755 Query 158240 GAAGAAGCAGGAGTTGATATTAACT-ACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGC 158298 |||||||| ||| ||||| ||| || |||| |||||||||||| ||||||| ||||| Sbjct 30756 GAAGAAGCTGGAATTGAT-TTACCTTACTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGC 30814 Query 158299 AGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCA 158358 |||||| |||| ||||| |||||||||| || || || || || |||||||| Sbjct 30815 TGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCAGACCAAAGTTTTCTTGATGATGATCA 30874 Query 158359 AATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGATTGTGTTGTTGT 158418 || | | |||||||||||| || |||| ||| ||||| || |||||| |||| || Sbjct 30875 GATTGGTGAAGGATTTGTTCTCACTTGTGCAGCTTATCCTACTTCTGATGTTGTTATTAA 30934 Query 158419 TACTGATCAAGAGGA 158433 ||| | ||||| || Sbjct 30935 AACTCACCAAGAAGA 30949 >seq8685 Length=252540 Score = 125 bits (138), Expect = 8e-24 Identities = 155/207 (75%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 158212 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAAC-TACTCTT 158270 ||| ||||| || || | || ||||| ||||||||||||||||| ||| | || |||| Sbjct 168758 AGATGATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGA-GTTACCTTATTCTT 168816 Query 158271 GTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGA 158330 || | |||||||| || ||| ||||||| ||||| |||||||| || ||||||||| Sbjct 168817 GTAGAGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGT 168876 Query 158331 GTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCA-GGATTTGTTCTTACGTGTGTA 158389 ||| ||||| || || |||| ||| | | || | || | |||| | || ||||| Sbjct 168877 CGGATGGTTCGTTTCTTGATGATGGTCACTTTG-AGAATGGTTATGTTTTGACTTGTGTG 168935 Query 158390 GCATATCCAACATCTGATTGTGTTGTT 158416 || |||||| |||||||||||| || Sbjct 168936 GCTTATCCACAGTCTGATTGTGTTATT 168962 >seq9882 Length=79551 Score = 120 bits (132), Expect = 3e-22 Identities = 183/257 (71%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 157511 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGC 157570 ||| |||| || | | |||| ||||| ||| | || |||| | || |||||||| |||| Sbjct 46244 ATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGC 46185 Query 157571 ACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTT 157630 |||| ||||||| || || || |||||| | || || ||||| |||||| | || || Sbjct 46184 ACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCC 46125 Query 157631 TGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAA 157689 | || || |||||| | | | || ||||| | | ||| || | ||||| || ||| Sbjct 46124 TATTTAGTG-TATGCATAGTTTTTTTGTAACTTC-TAGTTTGATCAGGGAAACCACAGAA 46067 Query 157690 ACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTT 157749 | || || || | ||||||| |||||||||||| || | || |||||| | || Sbjct 46066 AATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTA 46007 Query 157750 GCTGCACACGGTTACTT 157766 ||||| || ||||| || Sbjct 46006 GCTGCTCATGGTTATTT 45990 >seq8998 Length=67453 Score = 105 bits (116), Expect = 7e-18 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 158208 GTGA-AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAAC-TA 158265 |||| ||| || |||||||| | || ||||| ||||||||||||||||| ||| | || Sbjct 36708 GTGACAGATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGA-CTTACCTTA 36766 Query 158266 CTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGA 158325 |||||| | ||||||||||| || | ||||| ||||| ||||| | || |||||| Sbjct 36767 CTCTTGCAGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGA 36826 Query 158326 TCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTG 158385 || |||| ||||| || || ||| |||| | | || | ||| | || || Sbjct 36827 CCAATCTGATGGTTCGTTTCTTGATGATAATCATTTGGACAATGGTTATGTGTTGACTTG 36886 Query 158386 TGTAGCATATCCAACATCTGATTGTGT 158412 ||| || || |||| ||||||||||| Sbjct 36887 TGTGGCTTACCCAAAGTCTGATTGTGT 36913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545193751497200