Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq10724 134 2e-26 seq8473 129 7e-25 seq8685 104 3e-17 seq8998 91.5 2e-13 >seq10724 Length=33194 Score = 134 bits (148), Expect = 2e-26 Identities = 179/249 (72%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 138507 AGAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGG 138566 ||||||| |||| |||| || ||| || | |||||||| ||||| ||||| || Sbjct 30707 AGAACAAGAGGTTGAATGTGAAGAAGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGG 30766 Query 138567 TATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGT 138626 |||||| | || ||||| |||||||||||| | || || | |||||||||||| | || Sbjct 30767 AATTGATTTACCTTACTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGT 30826 Query 138627 TGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGG 138686 || |||| ||||| || ||||| ||| ||||||||||| || |||| | ||| Sbjct 30827 GTCTGGTTCTGTTGATCAATCAGACCAAAGTTTTCTTGATGATGATCAGATTGGTGAAGG 30886 Query 138687 ATTTATCATGACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGA 138746 |||| | | ||||| | ||| || || || || ||| | | ||| ||||| | |||| Sbjct 30887 ATTTGTTCTCACTTGTGCAGCTTATCCTACTTCTGATGTTGTTATTAAAACTCACCAAGA 30946 Query 138747 GGACGAACT 138755 || || || Sbjct 30947 AGATGATCT 30955 >seq8473 Length=72639 Score = 129 bits (142), Expect = 7e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138507 AGAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGG 138566 ||||||| |||| |||| ||||| || |||||||||| ||||| ||||| || Sbjct 6468 AGAACAAGAGATTGAATGTGAAGATGACGTTTATGTCCTTGATGCAGCTGAAGAAGCTGG 6409 Query 138567 TATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGT 138626 |||||| | || ||||| || ||||||||| | || || | |||||||||||| | || Sbjct 6408 AATTGATTTGCCTTACTCATGCCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGT 6349 Query 138627 TGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGG 138686 || |||| ||||| |||||||| ||||||||||||||| ||||| | | ||| Sbjct 6348 GTCTGGTTCTGTTGATCAATCTGACCAAAGTTTCCTTGATGATGAACAAATGGGTGAAGG 6289 Query 138687 ATTTATCATGACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAAC 138737 || | | | ||||| | || || || || || ||| | | ||| |||| Sbjct 6288 ATATGTTCTCACTTGTGCTGCTTATCCTACTTCTGATGTTGTTATTCAAAC 6238 >seq8685 Length=252540 Score = 104 bits (114), Expect = 3e-17 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 138496 CCTGTTGGCGAAGAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCT 138555 |||| ||| ||||| | ||||| | | ||||||||||| || | ||||| ||| Sbjct 168726 CCTGATGGTAAAGAAAACGAATTTGAGGTTCCAGATGATCAGTATATATTGGATGCAGCT 168785 Query 138556 GATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCT 138615 || |||||||| |||| | || || || ||| | |||||||| |||||||| |||||| Sbjct 168786 GAAGAAGCAGGAGTTGAGTTACCTTATTCTTGTAGAGCTGGTGCGTGTTCTACATGTGCT 168845 Query 138616 GGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAA 138675 ||||| | || || || |||||||| || || || |||||||||| || Sbjct 168846 GGTAAGATTGTATCGGGTGAAGTTGATCAGTCGGATGGTTCGTTTCTTGATGATGGTCAC 168905 Query 138676 ATTGCAGCA-GGATTTATCATGACTTGCGTAGCATACCCCACA-TCCGATTGTATAATTG 138733 ||| || | || | | | ||||||| || || || ||||| || |||||| | ||| Sbjct 168906 TTTG-AGAATGGTTATGTTTTGACTTGTGTGGCTTA-TCCACAGTCTGATTGTGTTATTC 168963 Query 138734 AAACTGAAAAAGA 138746 ||||| | || || Sbjct 168964 AAACTCACAAGGA 168976 >seq8998 Length=67453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 ||||| || ||||| | ||||| ||||| |||||||| |||| | || ||||| || Sbjct 36714 GATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTACTCTTGC 36773 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 | |||||||| ||||| || ||||||||||| | || ||| ||| || || ||| Sbjct 36774 AGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGACCAATCT 36833 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCA-GGATTTATCATGACTTGCGTAGC 138707 || || || ||||||||| | | | ||| | | || | | | ||||||| || || Sbjct 36834 GATGGTTCGTTTCTTGATGATAATC-ATTTGGACAATGGTTATGTGTTGACTTGTGTGGC 36892 Query 138708 ATACCCCACATCCGATTGT 138726 ||||| | || |||||| Sbjct 36893 TTACCCAAAGTCTGATTGT 36911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605578507609400