Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9146 105 2e-17 seq11595 96.9 8e-15 >seq9146 Length=70564 Score = 105 bits (116), Expect = 2e-17 Identities = 138/188 (73%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 ||||||||| ||||||| || | ||||| |||| || | |||| || | || Sbjct 54442 AAGAAAGCACAATGGGCGATGACTTGGATC---GATGGATCTCAAACTTTTGCTGAACGA 54386 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTT 131919 | |||||||| ||||||||||||||||| ||||| || ||| ||||| ||| | ||||| Sbjct 54385 ATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTT-TGTTCAATCTT 54327 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 ||||| ||||| || || | |||||||| | | || || ||| || | ||||| | Sbjct 54326 CTGGCTAAAGAAACGAGGTCTCATGCCTGGTTTAACTTTCTCAAATGAACTAATCTCTCG 54267 Query 131980 AGATGAAG 131987 ||| |||| Sbjct 54266 AGACGAAG 54259 >seq11595 Length=173172 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTG 131922 |||||||| ||||||||||||||||| ||||| || ||| ||||| || ||||||| || Sbjct 65013 GTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTT-TGCTCTATCTTCTG 64955 Query 131923 GCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGA 131982 ||| ||||| || ||| | ||||||||| | | || || || | || ||||| |||| Sbjct 64954 GCTAAAGAAACGAGGACTCATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCTCGAGA 64895 Query 131983 TGAAG 131987 |||| Sbjct 64894 CGAAG 64890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186634661253115