Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq8634 156 3e-33 seq9253 141 6e-29 seq8726 132 3e-26 seq10212 120 2e-22 seq8848 105 4e-18 seq8379 105 4e-18 seq11021 93.3 3e-14 seq10330 86.0 4e-12 >seq8634 Length=210279 Score = 156 bits (172), Expect = 3e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||| ||||| ||||||||| || || || || || ||||||||||||| Sbjct 12015 CACCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGG 12074 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || | | |||| || |||||||||||||| || ||||| ||||||||||| | | Sbjct 12075 CGAGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTG 12134 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| |||| |||| ||| | |||||| |||||| Sbjct 12135 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTC-ACATTGTCGATTGTGTCGGATGATTCA 12193 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || || |||| ||||| || ||||||||||| Sbjct 12194 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12243 >seq9253 Length=129212 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| | ||| | |||||||| || || ||||| || ||||||||||||| Sbjct 94859 CACCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGG 94800 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| | |||| ||||||||||||||||| || ||||| ||||| ||||| | | Sbjct 94799 CGAGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTG 94740 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| || ||| |||| |||| ||| | ||||| |||||| Sbjct 94739 GGATTCCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTGTCGATTGTGTCTGATGATTCT 94681 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 94680 ACCTCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 94631 >seq8726 Length=217380 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| ||||| | |||||| || || || || ||||| ||||||||||| | Sbjct 142502 CACCTCCTCTTAAACGGAGCACCAAGTGAAGCGTCGATTCCTTTTGGATGTTGTAATCCG 142561 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| | | |||| |||| ||| |||||||| || ||||| | ||||||||| | | Sbjct 142562 CGAGTGTTCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTG 142621 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| |||| |||| ||| | ||||| |||||| Sbjct 142622 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTC-ACATTGTCGATTGTGTCAGATGATTCA 142680 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 142681 ACCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 142730 >seq10212 Length=148016 Score = 120 bits (132), Expect = 2e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | |||||||| || || || || || |||||||| || | Sbjct 127838 CACCACCACGGAGACGGAGAACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAG 127779 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || || |||| || | ||||| ||||| ||||||||||| |||||||| | | Sbjct 127778 CGAGAGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTG 127719 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || |||| |||| ||| | |||||| || || Sbjct 127718 GGATGCCTTCCTTGTCTTGGATCTTAGCTTTC-ACATTGTCGATGGTGTCAGAGGACTCA 127660 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 || |||| ||||| |||||||| |||| ||||| || ||||||||||| ||| || Sbjct 127659 ACCTCAAGTGTGATTGTTTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTTTGCTG 127602 >seq8848 Length=112532 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||||||||| || || || |||||||| || | Sbjct 94605 CACCACCACGGAGACGGAGGACGAGATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAG 94546 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | ||||| ||||| || ||||| |||||||| || | | Sbjct 94545 CTAGAGTACGGCCATCTTCGAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTG 94486 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| || ||| ||| | ||| ||| | |||||| ||| || Sbjct 94485 GGATACCTTCCTTGTCTTGGATCTTCGCTTTGA-CATTGTCGATGGTGTCAGATGACTCA 94427 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| |||| ||||| || ||||||||||| Sbjct 94426 ACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 94377 >seq8379 Length=157374 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||||||||| || || || |||||||| || | Sbjct 116311 CACCACCACGGAGACGGAGGACGAGATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAG 116252 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | ||||| ||||| || ||||| |||||||| || | | Sbjct 116251 CTAGAGTACGGCCATCTTCGAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTG 116192 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| || ||| ||| | ||| ||| | |||||| ||| || Sbjct 116191 GGATACCTTCCTTGTCTTGGATCTTCGCTTTGA-CATTGTCGATGGTGTCAGATGACTCA 116133 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| |||| ||||| || ||||||||||| Sbjct 116132 ACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 116083 >seq11021 Length=502384 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||| || || || || || |||||||| || | Sbjct 217152 CACCACCACGGAGACGGAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAG 217093 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || |||| |||| |||||| ||||| || ||||| |||||||| || | | Sbjct 217092 CCAGAGTACGGCCGTCTTCCAGTTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTG 217033 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||| ||| ||| | ||| ||| | |||||| || || Sbjct 217032 GTATTCCTTCCTTGTCTTGAATCTTCGCTTTGA-CATTGTCGATGGTGTCAGAGGACTCA 216974 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 216973 ACCTCGAGAGTAATAGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 216924 >seq10330 Length=49715 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||||||||| || || || |||||| || ||||| || || | Sbjct 15459 ACCACCACGGAGTCGTAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTATAGTCAGC 15518 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || || | || ||||| || || || | ||||||||| ||| | || Sbjct 15519 TAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGG 15578 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||| || || || || |||| || | ||| | |||||| ||| | Sbjct 15579 GATACCTTCCTTATCCTGGATCTTGGCTTTC-ACGTTGTCAATGGTGTCAGAGCT---CT 15634 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| |||| || || || ||||| || || || || ||||| || |||||| Sbjct 15635 CCACCTCAAGGGTAATGGTCTTACCAGTCAAGGTCTTGACAAATATTTGCATA 15687 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| ||||| || || || ||||| | | || || |||| || Sbjct 15934 ACCAAATGAAGAGTTGATTCTTTCTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCT 15993 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || |||||||| ||||| || | | |||||||||| | || | ||||||||||| Sbjct 15994 AACTGTTTTCCAGCAAAGATAAGTCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 16053 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || | | ||| | ||| | ||||| ||| |||||| |||| ||||| || Sbjct 16054 ATCTT-AGCCTTAACGTTGTCGATAGTGTCAGAGCT---TTCCACCTCAAGGGTGATGGT 16109 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | ||||| || ||||||||||| Sbjct 16110 CTTTCCGGTAAGAGTTTTAACGAAGATCTGCAT 16142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328657068772800