Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq9882 141 3e-29 >seq9882 Length=79551 Score = 141 bits (156), Expect = 3e-29 Identities = 176/237 (74%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 19206 TGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTT 19265 ||||| |||| || ||| |||||||||||||||| || ||| | || || ||||| || Sbjct 46222 TGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGCACAACTTTCTTATACACCCATT 46163 Query 19266 CCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 |||||| | ||||| |||||||| ||| |||| || |||||||||| ||||| ||| Sbjct 46162 TCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCCTATTTAGTG-TATGCATAGTTT 46104 Query 19326 GCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCT 19384 |||| || | || | ||| | | ||||| || ||| | | |||| || | || | Sbjct 46103 TTTTGTAAC-TTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 46045 Query 19385 ACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTG 19441 ||| || || |||||| || | || || ||| |||| ||||||||||| ||||||| Sbjct 46044 ACATATTCGGTCAAGAAAAATAAACATACAACTTTGTAGCTGCTCATGGTTATTTTG 45988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141129163996470