Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq8798 100 3e-16 seq9990 84.2 2e-11 seq8641 84.2 2e-11 >seq8798 Length=192640 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | |||| ||||| ||||| ||||| || || |||||| Sbjct 20858 AATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCAGCCAAGGTACGG 20799 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||| | |||||| | || || |||||||| |||||||| Sbjct 20798 CCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGAGGAATGCCTTCC 20739 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 ||||| ||| ||| || | | || | ||||| | ||| || |||| || Sbjct 20738 TTATCTTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCGACCTCGAGAGTG 20679 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | |||||| ||||| Sbjct 20678 ATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 20641 >seq9990 Length=160576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || ||||||||||| | |||||| ||| ||| Sbjct 158758 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGACCATCCTCG 158817 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||||||| || | |||| |||||||| || |||||||| || |||||||| || Sbjct 158818 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTC 158873 >seq8641 Length=178042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || ||||||||||| | |||||| ||| ||| Sbjct 1819 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGACCATCCTCG 1760 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||||||| || | |||| |||||||| || |||||||| || |||||||| || Sbjct 1759 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTC 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476541406247400