Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq8798 89.7 5e-13 seq11704 87.8 2e-12 >seq8798 Length=192640 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||| | || || || | ||||| |||| ||||| | Sbjct 20641 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 20700 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||| ||| ||||| || || || || || || ||| Sbjct 20701 GATACCATCGACAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAG 20760 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || || ||||| || ||||||| | | | ||||||||| Sbjct 20761 CAAAGATTAATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACAAT 20820 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| |||||||| ||| | || || || | |||| ||||| || Sbjct 20821 ATTCAGAAAGAATCAACCCTGCACTTGGTTCTTCGATTAAGAGGTGG 20867 >seq11704 Length=175292 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||| |||||||| || ||||| ||| |||| || | | || |||||||| ||| Sbjct 63403 GACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTTGAA 63462 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||||| | ||| ||||||||||| || ||||| || || ||||| | || || Sbjct 63463 GATGGTAGAACCTT-AGCTGATTACAATATCCAGAAAGAGTCTACTCTTCATCTTGTATT 63521 Query 25387 AAGATTGAGAGGAGG 25401 ||| | ||||| || Sbjct 63522 GAGACTTAGAGGTGG 63536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445029221488800