Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11595 159 5e-33 seq9146 150 3e-30 >seq11595 Length=173172 Score = 159 bits (176), Expect = 5e-33 Identities = 378/563 (67%), Gaps = 15/563 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | ||||| | ||| ||||| ||||| | |||| |||| || || || Sbjct 65441 TGTTCCCAATTCACTACCCACAGATCTGGGAGATGTATAAGAAAG-CCGAAGCATCGTTC 65383 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGTCCACTGGGTGTCGCTGAGCG 1455870 ||||| || || || || || || ||| ||| | | |||| | || | || Sbjct 65382 TGGACTGCTGAAGAAGTAGATCTATCACAAGACGGACG--CGATTGGGAGAATCTAAACG 65325 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| ||| || || || ||||| |||||||||| |||| ||||| || ||||| ||| Sbjct 65324 ACGGCGAACGTCACTTTATCAAACACGTCCTCG-CTTTCTTCGCTGCTTCAGATGGAATC 65266 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||||| || || || || ||| ||| || ||| | | ||||| ||| Sbjct 65265 GTTTTAGAGAATCTCGCTTCTCGATTCATGTCAGATGTACAAGTCTCGGAGGCGCGTGCT 65206 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 |||||||| ||||| ||||| || || || || || ||||| | || ||||| || Sbjct 65205 TTTTACGGATTCCAAATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTC 65146 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || || |||| || |||| || || |||||||| || || || || | Sbjct 65145 GATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCTATTGAAACTATT 65086 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || ||| || || | |||||||||| ||||||| | || ||| | Sbjct 65085 CCTTGCGTTGCGAAGAAAGCTCAGTGGGCGATGACGTGGATC-----GATGGATCTCAAA 65031 Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 ||| || || || |||| | || || | || || || ||||| ||||| || || | Sbjct 65030 CCTTCGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCT 64971 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AA 1456288 | ||| | ||||| ||||| ||||| || || |||||||| || | |||| | || Sbjct 64970 TTTGCTCTATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGG--ATTAACTTTCTCAAA 64913 Query 1456289 CGAATTTATCAGTCGCGACGAAG 1456311 ||| || ||| ||| ||||||| Sbjct 64912 CGAGTTAATCTCTCGAGACGAAG 64890 >seq9146 Length=70564 Score = 150 bits (166), Expect = 3e-30 Identities = 363/541 (67%), Gaps = 15/541 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| | |||| |||| || || || ||||||||||| || || || | Sbjct 54788 GATCTGGGAGATGTACAAGAAAG-CCGAAGCATCATTCTGGACCGCCGAAGAAGTAGATC 54730 Query 1455835 TCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||| || | | |||| | || | ||||| || || || |||||||| Sbjct 54729 TATCACATGAC--GGACGTGATTGGGAGAATCTAAACGACGGTGAACGTCACTTCATCAA 54672 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| ||||| ||||||||| || ||||| ||||| ||||| || || | Sbjct 54671 ACACGTTCTCGC-TTTTTTCGCTGCATCAGATGGAATCGTTTTAGAGAATCTTGCTTCTC 54613 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || ||| ||| || ||| | | ||||| ||| |||||||| || || ||||| | Sbjct 54612 GATTCATGTCAGATGTTCAAGTCTCGGAGGCGCGTGCTTTTTACGGATTTCAAATCGCGA 54553 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 | || || || || ||||| | || ||||| |||| || || |||| || Sbjct 54552 TTGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGATACATATATCAAAGATAATA 54493 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 |||| || || ||||||||||| || || || | || | || | ||| || || Sbjct 54492 AAGAGAGAGATCATCTCTTTCGCGCAATTGAAACTATCCCTTGCGTTACGAAGAAAGCAC 54433 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 | |||||||||| |||||| | || ||| | ||||| || || |||| | Sbjct 54432 AATGGGCGATGACTTGGATC-----GATGGATCTCAAACTTTTGCTGAACGAATCGTAGC 54378 Query 1456193 CTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 || || | || || || ||||| ||||| || || || || | ||||| ||||| || Sbjct 54377 TTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTTCAATCTTCTGGCTAAA 54318 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AACGAATTTATCAGTCGCGACGAA 1456310 ||| || || |||||||| || || |||| | || ||| | ||| ||| |||||| Sbjct 54317 GAAACGAGGTCTCATGCCTGG--TTTAACTTTCTCAAATGAACTAATCTCTCGAGACGAA 54260 Query 1456311 G 1456311 | Sbjct 54259 G 54259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176681266717830