Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq10724 116 4e-21 seq9882 111 2e-19 seq8685 86.0 7e-12 seq8998 82.4 9e-11 seq8473 82.4 9e-11 >seq10724 Length=33194 Score = 116 bits (128), Expect = 4e-21 Identities = 156/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 158848 TTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACT-ATTCCTGTCGTGCTGGTGCC 158906 |||| || || || ||||| || ||| ||||| ||| || | || |||||||||||| | Sbjct 30742 TTCTTGATGCAGCTGAAGAAGCTGGAATTGAT-TTACCTTACTCATGTCGTGCTGGTTCT 30800 Query 158907 TGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATC--AGTCAT 158964 || || |||||||||||| |||| || ||||||| ||| || | ||| | Sbjct 30801 TGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCAGACCAAAGT-TT 30859 Query 158965 TCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCACTT 159024 |||| |||||||||||||||| ||||||||| | || || |||| | ||||||| |||| Sbjct 30860 TCTT-GATGATGATCAGATTGGTGAAGGATTTGTTCTCACTTGTGCAGCTTATCCTACTT 30918 Query 159025 CTGATTGTGTGGTCATGACTGAGCAAGAGGA 159055 ||||| ||| | | ||| | ||||| || Sbjct 30919 CTGATGTTGTTATTAAAACTCACCAAGAAGA 30949 >seq9882 Length=79551 Score = 111 bits (122), Expect = 2e-19 Identities = 181/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 158136 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 158195 ||| |||| || | | |||| ||||| ||| | || ||| |||||||||| || || | Sbjct 46244 ATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGC 46185 Query 158196 ACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTC 158255 ||||| | ||||| ||||| || || ||| | ||||| ||||| |||||| | || || | Sbjct 46184 ACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCC 46125 Query 158256 TTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAA 158314 | || || ||||||| | | | || ||||| | | | || | ||||| || ||| Sbjct 46124 TATTTAGTG-TATGCATAGTTTTTTTGTAACTTC-TAGTTTGATCAGGGAAACCACAGAA 46067 Query 158315 ACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT 158374 | || || || | ||||| | |||||||||||| || | || |||||| | || Sbjct 46066 AATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTA 46007 Query 158375 GCAGCCCATGGCTACTT 158391 || || ||||| || || Sbjct 46006 GCTGCTCATGGTTATTT 45990 >seq8685 Length=252540 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 158838 GATCAGTACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAAC-TATTCCTGTCG 158896 |||||||| || | || || || ||||| ||||||||||| ||| | ||||| ||| | Sbjct 168762 GATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGA-GTTACCTTATTCTTGTAG 168820 Query 158897 TGCTGGTGCCTGTTCTTCCTGTGCTGGTAAACTTG--TCAGCGGAACTGTTGACCAAAGC 158954 |||||||| |||||| | ||||||||||| ||| || | ||| ||||| || Sbjct 168821 AGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAA--GTTGATCAGTCG 168878 Query 158955 GATCAGTCATTCTTGGATGATGATCAGATTGCAGAA-GGATTTATCCTTACGTGTGTATC 159013 ||| || || | ||||||| ||| ||| |||| || | | | | || ||||| | Sbjct 168879 GATGGTTCGTTTCTTGATGATGGTCACTTTG-AGAATGGTTATGTTTTGACTTGTGTGGC 168937 Query 159014 TTATCCCACTTCTGATTGTGT 159034 |||||| ||||||||||| Sbjct 168938 TTATCCACAGTCTGATTGTGT 168958 >seq8998 Length=67453 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 158838 GATCAGTACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAAC-TATTCCTGTCG 158896 || || ||||| | || || || ||||| ||||||||||| ||| | || || || | Sbjct 36717 GACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGA-CTTACCTTACTCTTGCAG 36775 Query 158897 TGCTGGTGCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGA 158956 |||||||| ||||| | ||||||||||| |||| | || |||||||||| || Sbjct 36776 AGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGACCAATCTGA 36835 Query 158957 TCAGTCATTCTTGGATGATGATCAGATTGCAGAA-GGATTTATCCTTACGTGTGTATCTT 159015 | || || | |||||| |||| ||| | || || | | | | || ||||| ||| Sbjct 36836 TGGTTCGTTTCTTGATGATAATCA-TTTGGACAATGGTTATGTGTTGACTTGTGTGGCTT 36894 Query 159016 ATCCCACTTCTGATTGTGTGGTC 159038 | || | |||||||||||| || Sbjct 36895 ACCCAAAGTCTGATTGTGTGATC 36917 >seq8473 Length=72639 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 158850 CTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCCTGT 158909 || || || || ||||| || ||| ||||| | || || || ||||||||| | || Sbjct 6431 CTTGATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTACTCATGCCGTGCTGGTTCTTGC 6372 Query 158910 TCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCATTCTTG 158969 || |||||||||||| |||| || ||||||| ||| || || ||| | Sbjct 6371 TCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCTGACCAAAGTTTCCTT 6312 Query 158970 GATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCACTTCTGAT 159029 |||||||| || || | ||||||| | | || || |||| ||||||| ||||||||| Sbjct 6311 GATGATGAACAAATGGGTGAAGGATATGTTCTCACTTGTGCTGCTTATCCTACTTCTGAT 6252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572940087798000