Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq10724 123 3e-23 seq8685 120 3e-22 seq8998 96.9 4e-15 seq9882 93.3 5e-14 >seq10724 Length=33194 Score = 123 bits (136), Expect = 3e-23 Identities = 186/258 (72%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 161089 TGAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGA 161148 |||||| | |||| ||| |||||||| ||| || || | |||||||| ||||| Sbjct 30701 TGAAGGAGAACAAGAGGTTGAATGTGAAGAAGATGTTTATGTTCTTGATGCAGCTGAAGA 30760 Query 161149 GGCAGGAGTTGATATTAACT-ATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTA 161207 || ||| ||||| ||| || | || |||||||||||| ||||||| ||||| |||| Sbjct 30761 AGCTGGAATTGAT-TTACCTTACTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTA 30819 Query 161208 AAATTATTTCAGGTACAGTAGACCAGTCTGACC--AGTCCTTCTTGGATGATGACCAGAT 161265 || || | || ||| | || || || || |||| ||| ||||| |||||||| ||||| Sbjct 30820 AAGTTGTGTCTGGTTCTGTTGATCAATCAGACCAAAGT-TTTCTT-GATGATGATCAGAT 30877 Query 161266 TGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACTAGCGATTGTGTGATTCAAAC 161325 || ||||| || | || |||| || ||||||||| ||| ||| ||| |||| Sbjct 30878 TGGTGAAGGATTTGTTCTCACTTGTGCAGCTTATCCTACTTCTGATGTTGTTATTAAAAC 30937 Query 161326 TGAGCAAGAGGAGAATCT 161343 | | ||||| || |||| Sbjct 30938 TCACCAAGAAGATGATCT 30955 >seq8685 Length=252540 Score = 120 bits (132), Expect = 3e-22 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 161120 GACCAGTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAAC-TATTCTTGTCG 161178 || ||||| || || |||||||| ||||| ||||||||||| ||| | ||||||||| | Sbjct 168762 GATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGA-GTTACCTTATTCTTGTAG 168820 Query 161179 TGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGA 161238 |||||||| || ||| | ||||| ||||| ||| | || ||| ||| || ||||| || Sbjct 168821 AGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTCGGA 168880 Query 161239 CCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATA 161298 || || | ||||||| || |||| ||| | ||||||| ||||| || || Sbjct 168881 TGGTTCGTTTCTTGATGATGGTCACTTTGAGAATGGTTATGTTTTGACTTGTGTGGCTTA 168940 Query 161299 TCCTACTAGC-GATTGTGTGATTCAAACT 161326 ||| || | |||||||| ||||||||| Sbjct 168941 TCC-ACAGTCTGATTGTGTTATTCAAACT 168968 >seq8998 Length=67453 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 161120 GACCAGTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAAC-TATTCTTGTCG 161178 ||||| ||||| || |||||||| ||||| ||||||||||| ||| | || ||||| | Sbjct 36717 GACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGA-CTTACCTTACTCTTGCAG 36775 Query 161179 TGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGA 161238 ||||||||||| || | ||||| ||||| ||| | ||||| || ||||| ||||| Sbjct 36776 AGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGACCAATCTGA 36835 Query 161239 CCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATA 161298 || || | |||||| | || | || ||| | | ||||| ||||| || || Sbjct 36836 TGGTTCGTTTCTTGATGATAATCATTTGGACAATGGTTATGTGTTGACTTGTGTGGCTTA 36895 Query 161299 TCCTACTAGCGATTGTGTGATTCAAAC 161325 || | ||||||||||| || || Sbjct 36896 CCCAAAGTCTGATTGTGTGATCCATAC 36922 >seq9882 Length=79551 Score = 93.3 bits (102), Expect = 5e-14 Identities = 177/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 160420 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 160479 ||| |||| || | | |||| ||||| ||| | || ||| |||||||||| || || | Sbjct 46244 ATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGC 46185 Query 160480 ACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTT 160539 |||| | ||||| || || || |||||| | || || ||||| |||||| | || || Sbjct 46184 ACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCC 46125 Query 160540 TGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAA 160598 | || || |||||| | | | || ||||| | | | || | ||||| || ||| Sbjct 46124 TATTTAGTG-TATGCATAGTTTTTTTGTAACTTC-TAGTTTGATCAGGGAAACCACAGAA 46067 Query 160599 ACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTC 160658 | || || || | ||||| | ||||||||||| || | || |||||| | || Sbjct 46066 AATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTA 46007 Query 160659 GCAGCCCATGGTTACTT 160675 || || |||||||| || Sbjct 46006 GCTGCTCATGGTTATTT 45990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559422067633000