Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq10724 131 2e-25 seq8473 122 1e-22 seq8685 93.3 5e-14 seq8998 91.5 2e-13 >seq10724 Length=33194 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 179463 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 179522 |||||| || ||| ||| | ||||| || ||||||||||| || | ||| | ||| Sbjct 30722 ATGTGAAGAAGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGAATTGATTTACCTTA 30781 Query 179523 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGA 179582 ||| |||||||||||| |||| ||| ||||||||||||| | | | ||| |||||||| Sbjct 30782 CTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGA 30841 Query 179583 TCAAAGCGATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTG 179642 |||| || ||| ||| | ||||| ||||| || | |||||| |||| ||||| Sbjct 30842 TCAATCAGACCAAAGTTTTCTTGATGATGATCAGATTGGTGAAGGATTTGTTCTCACTTG 30901 Query 179643 CGTATCTTATCCTACTAGTGAT 179664 | | ||||||||||| |||| Sbjct 30902 TGCAGCTTATCCTACTTCTGAT 30923 >seq8473 Length=72639 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 179463 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 179522 |||||| ||||| ||| ||||||| || ||||||||||| || | ||| | ||| Sbjct 6453 ATGTGAAGATGACGTTTATGTCCTTGATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTA 6394 Query 179523 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGA 179582 ||| || ||||||||| |||| ||| ||||||||||||| | | | ||| |||||||| Sbjct 6393 CTCATGCCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGA 6334 Query 179583 TCAAAGCGATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTG 179642 |||| || ||| || | ||||| || ||||||| |||| | |||| ||||| Sbjct 6333 TCAATCTGACCAAAGTTTCCTTGATGATGAACAAATGGGTGAAGGATATGTTCTCACTTG 6274 Query 179643 CGTATCTTATCCTACTAGTGAT 179664 | ||||||||||| |||| Sbjct 6273 TGCTGCTTATCCTACTTCTGAT 6252 >seq8685 Length=252540 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 179470 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 179529 |||||||||||||| | || || |||||||||||||| || || | ||| |||||| Sbjct 168759 GATGATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTGT 168818 Query 179530 CGTGCTGGTGCTTGTTCATCTTGTGCTGGTAA-AT--TAGAGAGTGGATCTGTTGATCAA 179586 | |||||||| ||||| | ||||||||||| || || | ||| | |||||||| Sbjct 168819 AGAGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAA---GTTGATCAG 168875 Query 179587 AGCGATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTA 179646 ||| |||||| | ||||| | ||| | ||| || | | || ||||||| || Sbjct 168876 TCGGATGGTTCGTTTCTTGATGATGGTCACTTTGAGAATGGTTATGTTTTGACTTGTGTG 168935 Query 179647 TCTTATCC 179654 ||||||| Sbjct 168936 GCTTATCC 168943 >seq8998 Length=67453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 179470 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 179529 ||||| || || || | || || |||||||||||||| || || | ||||||||| Sbjct 36714 GATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTACTCTTGC 36773 Query 179530 CGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGC 179589 | ||||||||||||||| ||||||||||||| | | || || |||||| ||| Sbjct 36774 AGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGACCAATCT 36833 Query 179590 GATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCT 179649 ||| |||||| | ||||| |||| |||| || | | | ||||||| || || Sbjct 36834 GATGGTTCGTTTCTTGATGATAATCATTTGGACAATGGTTATGTGTTGACTTGTGTGGCT 36893 Query 179650 TATCC 179654 || || Sbjct 36894 TACCC 36898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614527596935200