Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq11047 127 3e-24 >seq11047 Length=258962 Score = 127 bits (140), Expect = 3e-24 Identities = 436/671 (65%), Gaps = 14/671 (2%) Strand=Plus/Minus Query 162135 TTATGTATTCTTAGCTGCTGCTTTAGTTGGTGGTAT-CATGGCTAACAAGACTAGAAAGG 162193 ||||||| ||||||| || ||| ||||||||| || |||| ||||||| ||| | Sbjct 127637 TTATGTAATCTTAGCAGCAGCTAAAGTTGGTGGGATTCATG-CTAACAACACTTATCCTG 127579 Query 162194 CAGAGTTCTTACATGACAATCTAATGATGCAGTGTAATGTAATTGACTCTGCATACTATA 162253 | || ||| | || ||||| ||| || |||||| ||| ||||||| || | Sbjct 127578 CTGATTTCATTGGTGTTAATCTCCAGATTCAAACTAATGTTATTCACTCTGCTTATGAAC 127519 Query 162254 GTGGAGTGAAGAAACTTCTATTCCTAGGTACTTCTTGTATCTATCCAGCAGGAAGGCACC 162313 |||||||||||| ||||| ||||| || ||||||| || || || | | | Sbjct 127518 ATGGAGTGAAGAAGCTTCTCTTCCTTGGATCTTCTTGCATTTACCCTAAATTTGCTCCTC 127459 Query 162314 ATCCACTAGTGGAACATGAACTACTCACAGGACTATTAGAACCAACCAATGACGCATACG 162373 | ||| | ||| | | | || ||| | | |||||||| ||||| |||| Sbjct 127458 AACCAATTCCTGAATCAGCTTTGTTAACCGGATCACTTGAACCAACTAATGAATGGTACG 127399 Query 162374 CAATCGCAAAGATCGCAGGGATCAAACAATGTGACTTCTACCGAGAACAATATGGATTTG 162433 | || || || ||||||||||| || ||| | || || || |||||| | Sbjct 127398 CGATTGCTAAAATCGCAGGGATTAAGACTTGTCAAGCTTATCGTATTCAGCATGGATGGG 127339 Query 162434 ATGCTATCTCTATCATGCCTCCTAATCTATATGGTCCTGGAGATAATTTCAA---TGAGG 162490 |||| |||||| ||||||| ||||||| || |||||| || |||||| | | || Sbjct 127338 ATGCAATCTCTGGCATGCCTACTAATCTCTACGGTCCTAACGACAATTTCCACCCTCAGA 127279 Query 162491 GATCAGGACATGTCCTCGCCTCATTGATGAATAGGTTTCACCTAGCGAAGGAAGCAGGTG 162550 || |||||| || | | | |||| ||||| || ||| || | || | Sbjct 127278 ATTC---ACATGTTCTTCCTGCTCTAATGAGGAGGTTCCATGAAGCTAAAGTGAATGGAG 127222 Query 162551 CATCTAGAGTTGAATGTTGGGGTGA--TGGGACACCTATGAGGGAGTTCCTATATGTGGA 162608 || ||||| || || || || || | || | ||||||||| || | || || Sbjct 127221 CAGAGGAAGTTG--TGGTGTGGGGAACAGGTAGTCCATTAAGGGAGTTCTTACACGTCGA 127164 Query 162609 TGACTTAGCAGATGCTTCCTTATACTTTATGGATAGTTATAGTGAGTCTGGGCACATTAA 162668 ||| ||||| ||||||| | | ||| ||||| || |||| | | || |||| Sbjct 127163 TGATTTAGCTGATGCTTGTGTTTTCTTATTGGATCAATACAGTGGATTAGAACATGTTAA 127104 Query 162669 TACTGGGACTGGTAGGGATGTAACTATCAAACAACTAGCGGAGACTATTG-CTGATGTAG 162727 | || | |||| || ||||| |||||| | | || || |||| || || || | Sbjct 127103 CATAGGAAGTGGTCAAGAAGTAACAATCAAAGAGTTGGCTGA-ACTAGTGAAAGAGGTTG 127045 Query 162728 TTGGATACAAAGGTGAGATAGGTTGGGATACAACTAAACCCAACGGAAACCCAAGGAAAC 162787 | || | ||||| || | || ||||||| | |||||| | || | |||||||||| Sbjct 127044 TGGGTTTTGAAGGTAAGCTTGGATGGGATAGTAGTAAACCAGATGGGACACCAAGGAAAC 126985 Query 162788 TACTTGACAGC 162798 || | || ||| Sbjct 126984 TAATGGATAGC 126974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729822710934200