Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq10724 131 2e-25 seq8473 127 2e-24 seq8685 100 3e-16 seq8998 95.1 1e-14 >seq10724 Length=33194 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 176330 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 176389 |||||| || ||| ||| | ||||| || ||||||||||| || | ||| | ||| Sbjct 30722 ATGTGAAGAAGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGAATTGATTTACCTTA 30781 Query 176390 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGA 176449 ||| |||||||||||| |||| ||| ||||||||| ||| | | | |||||||||||| Sbjct 30782 CTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGA 30841 Query 176450 TCAGAGTGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTG 176509 ||| || || ||| || ||||||||||| |||| || ||| |||| ||||| Sbjct 30842 TCAATCAGACCAAAGTTTTCTTGATGATGATCAGATTGGTGAAGGATTTGTTCTCACTTG 30901 Query 176510 CGTATCTTATCCTACTAGTGAT 176531 | | ||||||||||| |||| Sbjct 30902 TGCAGCTTATCCTACTTCTGAT 30923 >seq8473 Length=72639 Score = 127 bits (140), Expect = 2e-24 Identities = 152/205 (74%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 176330 ATGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTA 176389 |||||| ||||| ||| ||||||| || ||||||||||| || | ||| | ||| Sbjct 6453 ATGTGAAGATGACGTTTATGTCCTTGATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTA 6394 Query 176390 CTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGA 176449 ||| || ||||||||| |||| ||| ||||||||| ||| | | | |||||||||||| Sbjct 6393 CTCATGCCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGA 6334 Query 176450 TCAGAGTGATCAGTCTTTCCTGGATGATGATCAAAT---TGAATCTGGTTTTATTCTGAC 176506 ||| ||| || |||||| |||||||| ||||| |||| || | | |||| || Sbjct 6333 TCAATCTGACCAAAGTTTCCTTGATGATGAACAAATGGGTGAA---GGATATGTTCTCAC 6277 Query 176507 TTGCGTATCTTATCCTACTAGTGAT 176531 ||| | ||||||||||| |||| Sbjct 6276 TTGTGCTGCTTATCCTACTTCTGAT 6252 >seq8685 Length=252540 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 |||||||||||||| | || || |||||||||||||| || || | ||| |||||| Sbjct 168759 GATGATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTGT 168818 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | |||||||| ||||| | |||||||| || | | ||| ||||||||| Sbjct 168819 AGAGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTCG 168878 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516 ||| || || || ||||||| ||| |||| ||||| | || ||||||| || || Sbjct 168879 GATGGTTCGTTTCTTGATGATGGTCACTTTGAGAATGGTTATGTTTTGACTTGTGTGGCT 168938 Query 176517 TATCC 176521 ||||| Sbjct 168939 TATCC 168943 >seq8998 Length=67453 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 ||||| || || || | || || |||||||||||||| || || | ||||||||| Sbjct 36714 GATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTACTCTTGC 36773 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | ||||||||||||||| |||||||||| || | | || ||| |||||| || | Sbjct 36774 AGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGACCAATCT 36833 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516 ||| || || || |||||| |||| | || ||||| | | ||||||| || || Sbjct 36834 GATGGTTCGTTTCTTGATGATAATCATTTGGACAATGGTTATGTGTTGACTTGTGTGGCT 36893 Query 176517 TATCC 176521 || || Sbjct 36894 TACCC 36898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605920857469200