Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq10724 93.3 5e-14 seq8473 93.3 5e-14 seq8998 82.4 8e-11 >seq10724 Length=33194 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 || || ||||| ||||| || | ||| || || ||||||||||||||| |||| Sbjct 30747 GATGCAGCTGAAGAAGCTGGAATTGATTTACCTTACTCATGTCGTGCTGGTTCTTGCTCA 30806 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||||||||| ||| | || | ||||| ||| |||||| ||| | || Sbjct 30807 AGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCAGACCAAAGTTTTCTTGAT 30866 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGT 159733 |||||||| | | |||||||||| |||||||||||| | || ||||| || || || Sbjct 30867 GATGATCAGATTGGTGAAGGATTTGTTCTCACTTGTGCAGCTTATCCTACTTCTGATGT 30925 >seq8473 Length=72639 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 || || ||||| ||||| || | ||| || || ||||| ||||||||| |||| Sbjct 6428 GATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTACTCATGCCGTGCTGGTTCTTGCTCA 6369 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||||||||| ||| | || | ||||| ||| ||||||| |||| | || Sbjct 6368 AGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCTGACCAAAGTTTCCTTGAT 6309 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGT 159733 ||||| ||| | | |||||||| | |||||||||||| | || ||||| || || || Sbjct 6308 GATGAACAAATGGGTGAAGGATATGTTCTCACTTGTGCTGCTTATCCTACTTCTGATGT 6250 >seq8998 Length=67453 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 159540 GACCAATACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGT 159599 ||||||||||| || || || ||||| |||||||| || || || || || || | Sbjct 36717 GACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTACTCTTGCAGA 36776 Query 159600 GCTGGTGCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGAC 159659 |||||||||||| || |||||||||||||||| || || ||||||||| ||| Sbjct 36777 GCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGACCAATCTGAT 36836 Query 159660 CAATC-TTTCTTGGACGATGATCA 159682 || |||||| || ||| |||| Sbjct 36837 GGTTCGTTTCTT-GATGATAATCA 36859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552392697147200