Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq8473 107 2e-18 seq10724 98.7 1e-15 seq8998 93.3 5e-14 >seq8473 Length=72639 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177375 TGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434 |||||||| || || |||| || || ||||||||||| || ||||| | |||| Sbjct 6452 TGTGAAGATGACGTTTATGTCCTTGATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTAC 6393 Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494 |||||||| |||||| |||| ||| |||||||||||| ||| | |||| ||| ||| Sbjct 6392 TCATGCCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGAT 6333 Query 177495 CAAAGCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGT 177554 ||| || ||| ||| | ||||| || ||||||| ||||| | |||| || ||| Sbjct 6332 CAATCTGACCAAAGTTTCCTTGATGATGAACAAATGGGTGAAGGATATGTTCTCACTTGT 6273 Query 177555 GTGTCATATCCCAC 177568 | | ||||| || Sbjct 6272 GCTGCTTATCCTAC 6259 >seq10724 Length=33194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177375 TGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434 |||||||| ||| || | || || || ||||||||||| || ||||| | |||| Sbjct 30723 TGTGAAGAAGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGAATTGATTTACCTTAC 30782 Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494 ||||| || |||||| |||| ||| |||||||||||| ||| | |||| ||| ||| Sbjct 30783 TCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGAT 30842 Query 177495 CAAAGCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGT 177554 ||| || ||| || | ||||| ||||| || | ||||||| |||| || ||| Sbjct 30843 CAATCAGACCAAAGTTTTCTTGATGATGATCAGATTGGTGAAGGATTTGTTCTCACTTGT 30902 Query 177555 GTGTCATATCCCAC 177568 | | ||||| || Sbjct 30903 GCAGCTTATCCTAC 30916 >seq8998 Length=67453 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 177376 GTGA-AGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434 |||| ||| || || ||||| | || || |||||||||||||| ||||| | |||| Sbjct 36708 GTGACAGATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTAC 36767 Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494 || ||| | ||||||||||||||| | ||||||||||| ||| || ||| ||| || Sbjct 36768 TCTTGCAGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGATGTTGAC 36827 Query 177495 CAAAGCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGT 177554 ||| ||| ||||| | ||||| |||| |||| || | | | |||| ||| Sbjct 36828 CAATCTGATGGTTCGTTTCTTGATGATAATCATTTGGACAATGGTTATGTGTTGACTTGT 36887 Query 177555 GTGTCATATCC 177565 ||| | || || Sbjct 36888 GTGGCTTACCC 36898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610240224859200