Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9146 235 8e-57 seq11595 223 5e-53 seq8766 141 1e-28 seq11110 123 3e-23 seq11555 113 6e-20 >seq9146 Length=70564 Score = 235 bits (260), Expect = 8e-57 Identities = 587/882 (67%), Gaps = 12/882 (1%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||||||||| || ||||| ||||| |||||||| |||||||| |||| | ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAA-- 39442 |||||| ||||||||||||| || || || || | |||| | || Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAG--CGAAACC 54062 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 || |||||||| |||||||| || || || |||| | |||| |||||||| | Sbjct 54063 ATTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACC 54122 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 | ||| || || || || ||||||| ||||||| || || || || | Sbjct 54123 AACGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACG 54182 Query 39563 ATCGATGTTACTACCTCATCACTCGG--TGGATG-CAATAAATGTTTAAACATTAAGCAG 39619 || || | || ||| || | | | | | ||| | | | || | | | ||| Sbjct 54183 ATTGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCAA 54239 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 ||||| ||||| |||| ||| || |||| | |||| ||| || || || || | ||| Sbjct 54240 GCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCA 54299 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGAT 39738 ||||| ||||| || || || ||||| || || | | |||||| | || || |||||||| Sbjct 54300 GGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGAT 54358 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCA 39798 ||||| || || || || || | || || | || || | || ||||| Sbjct 54359 ACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCCATCGATCCA 54418 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 || ||||| | ||||||||| | || ||||| || ||||| || || |||||| Sbjct 54419 AGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAG 54478 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 || || | | || | | ||||||| | ||||||||| | | ||||||||||| || || Sbjct 54479 ATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGA 54538 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 ||| || || |||||||| || ||||||||||||||| | || || | | ||| || Sbjct 54539 ATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAAC 54598 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 ||||| |||| || | ||| || || |||||||| || || ||||| Sbjct 54599 ATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAAAA 54658 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098 || | || ||||| || || | |||| || | | || | ||| ||| Sbjct 54659 AGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCACGTCC 54718 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 || | ||||| |||||||||||| || ||||| || || || || || || |||||||| Sbjct 54719 GTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTACAT 54778 Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 | ||| || | |||| || || ||||| ||| ||||| Sbjct 54779 CTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq11595 Length=173172 Score = 223 bits (246), Expect = 5e-53 Identities = 568/860 (66%), Gaps = 6/860 (1%) Strand=Plus/Plus Query 39346 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||| || || |||||||| || | | ||||||| |||||| ||||||||||||| Sbjct 64597 TTTCTCAAAGAAGTTAGTTTTACCCTGAAGTGATATAAGTTCCATCCAATCAAACGGATT 64656 Query 39406 AGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTC 39465 ||| || || || | || | | | || |||||| |||||||| || Sbjct 64657 AGTCACACCGTACACCTTACCGTACCCAAGCGCACCTAACAGTCTATCAGCAACAAACTC 64716 Query 39466 TATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGT 39525 || || |||| | |||| |||||||| | | ||| || || || Sbjct 64717 GATATACTGACTCATTAACTCACGGTTCATTCCAACTAACGCGCATGGAAGCGCGTCGCA 64776 Query 39526 TAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACT 39585 || ||||||| |||| || ||||| || || | || ||| |||| ||| || | Sbjct 64777 TACAAACTCTCTTTCAATCTCTACTGCGTCGCAGACGATTGATTTTACACGCTCCTCCGT 64836 Query 39586 CGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCA 39643 | | | | | | | |||| | | ||| ||||| || || |||| ||| || Sbjct 64837 TAGCTTTGTTCTTAAGAGCGAGTAAAGA--AGGCAAGCGAAATCGCAGTGTAAGCCTTCG 64894 Query 39644 TCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGC 39703 |||| | ||||| ||||| || || || | ||||||||| || || || || || ||| Sbjct 64895 TCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTCTTTAGC 64954 Query 39704 CAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAAC 39762 || || || | |||||||| | || || |||||||| ||||| || || || || || Sbjct 64955 CAGAAGATAG-AGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAAGCTAC 65013 Query 39763 AAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTT 39822 | || || || | || | || |||||| || ||||| | ||||||||| Sbjct 65014 GATTCGTTCAGCGAAGGTTTGAGATCCATCGATCCACGTCATCGCCCACTGAGCTTTCTT 65073 Query 39823 CTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTT 39882 | || ||||| || ||||| |||||| |||||||| || | | || | ||||||| Sbjct 65074 CGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTT 65133 Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 | ||| ||||| | | ||||||||||| || ||||| || || |||||||| || || Sbjct 65134 GATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTCAATCGCGATTTG 65193 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 |||||||||||| | || || | | |||||| ||||| |||| || | Sbjct 65194 GAATCCGTAAAAAGCACGCGCCTCCGAGACTTGTACATCTGACATGAATCGAGAAGCGAG 65253 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||| || || |||||||| ||| || || || || | || ||||| ||||| | Sbjct 65254 ATTCTCTAAAACGATTCCATCTGAAGCAGCGAAGAAAGCGAGGACGTGTTTGATAAAGTG 65313 Query 40063 TTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 40122 ||| || | | || | ||| || |||| ||||| |||||||||||| Sbjct 65314 ACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGTCCGTCTTGTGATAGATCTACTTCTTC 65373 Query 40123 AGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTAT 40182 ||| ||||| ||||| || || || || || ||||| | ||| || | | || || || Sbjct 65374 AGCAGTCCAGAACGATGCTTCGGCTTTCTTATACATCTCCCAGATCTGTGGGTAGTGAAT 65433 Query 40183 TGGAAAAATAACAAATCTAT 40202 ||| || ||| ||||||| Sbjct 65434 TGGGAACATACAGAATCTAT 65453 >seq8766 Length=69736 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | ||||||||||| |||||||||||| | | ||| | || || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || || ||||||||||| || ||||| || | || || | ||||| Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTGTGAATACCAACAGCAACCCTCATCAG 54694 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||||| ||| || | | | |||||||| ||||||||| |||| || Sbjct 54695 CATGTGTTGAGGTCTTTCAACAACTGTCCCTTGGATTTTCAAAAGGTATGATCTTTCAAG 54754 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||||||||||| | | ||| ||| || | || || ||||| Sbjct 54755 AGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | |||| ||||| | ||| | || | || ||| || | |||||| Sbjct 54242 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGGACAATACC 54301 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| ||||||||| || || Sbjct 54302 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCTCGAATATTATGAACTGA 54361 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| || | ||| ||||| || Sbjct 54362 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACATTCCTTAAGTGTTTCATAAAT 54421 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||||||| ||||| Sbjct 54422 GCCCTCAATGCTATCATCTTTCATG 54446 >seq11110 Length=291012 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | |||| ||||| | ||| | || | || ||| |||| |||||| Sbjct 226146 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACC 226205 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| ||| || |||||| || ||| Sbjct 226206 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGA 226265 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| || || || Sbjct 226266 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAAT 226325 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | |||||||||||| Sbjct 226326 GCCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || ||||| | ||||||||||| |||||||||||| | | ||| | || || Sbjct 226477 AGTTCCAGCGTTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 226536 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || |||| || || ||||| ||||| || ||||| || | || || | ||| | Sbjct 226537 ATAAGTTTTGATTGCAGATTCAATATCATCCTTGTGAATGCCAACAGCAACCCTCATAAG 226596 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || | | | | |||||| |||||||| | || || Sbjct 226597 CATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGAGTTTCAAGAGGTATGACCTCTCAAG 226656 Query 70170 AGTTTTAAACCCAAA 70184 ||||||||| ||||| Sbjct 226657 AGTTTTAAATCCAAA 226671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 || |||||||||||||| | || || || |||||||| |||||||| || | | | ||| Sbjct 224897 AGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTTT 224956 Query 69142 GAACTTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| ||| ||| ||| | |||||| ||||| | ||||||||| ||||| ||||| Sbjct 224957 GAAGTTTTTGCTGTCT-CCACAGGATAGTAATTCACATCTATAATCTTATTGAGATT 225012 >seq11555 Length=225698 Score = 113 bits (124), Expect = 6e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 69773 CAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAG 69832 |||| | |||||| || | |||||| |||| ||||||||||||| |||||||| ||| Sbjct 13296 CAGTATCATTATATACACGCAGCATTGGAACAATACCATTAGATGATCCATTTGTGCCAC 13355 Query 69833 AAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTT 69892 ||| |||||||| ||| || || || | || | ||| || ||||| || | Sbjct 13356 GAATGTAACTTCCAGCTGCACGTATGTTGTGTACTGAAACACCAATACCTCCAGCTGATC 13415 Query 69893 TAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA 69952 | |||| |||||| ||| ||||| |||||||||||||| ||||||||||| ||| Sbjct 13416 TGCTTATTACTGCACAATCTTTTAATGTATCATATATACCCTCGATGCTATCATCCTTCA 13475 Query 69953 TGTTAAGAAGAAAACAGCTA 69972 | || ||||| || ||| Sbjct 13476 TACATAGCAGAAAGCAACTA 13495 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||||||| | ||||| || |||||||||||| | | |||||||||| || ||| Sbjct 11471 AAGACTCTACGACTATAAATGTTGGAGGTATATGGTTCAAAACATTCATTATTCCCAAGA 11530 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 || ||| ||||| ||||||||||| |||||||| Sbjct 11531 ATCTGACTGGTTGAAGCAGTTGGCATTGGTGCCAC 11565 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | ||| || | ||||||| ||| |||||||||||| | | ||| | | || Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || || || || ||||| || ||| || || | | || | ||| ||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||||| ||| || ||| | | ||| || ||||||||| |||| || Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 70171 GTTTTAAACCCAAAATA 70187 |||||||| ||||| || Sbjct 13782 GTTTTAAAACCAAAGTA 13798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686808210792600