Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9146 178 1e-39 seq11595 152 4e-32 seq11600 100 2e-16 seq10149 82.4 6e-11 >seq9146 Length=70564 Score = 178 bits (196), Expect = 1e-39 Identities = 391/578 (68%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| ||||| |||| | || ||| | |||||||| ||||| | || ||||| | Sbjct 54810 TGTTTCCGATTCATTATCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCATTCT 54751 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || |||||||| ||| | | | ||| | ||||| | || |||| || Sbjct 54750 GGACCGCCGAAGAAGTAGATCTATCACATGACGGACGTGATTGGGA-GAATCTAAACGAC 54692 Query 43827 AA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 ||| || || || ||| | || ||||| ||||| || || || || Sbjct 54691 GGTGAACGTCACTTCATCAAACACGTTCTCGCTTTTTTCGCTGCATCAGATGGAATCGTT 54632 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || ||| | | | ||| || | ||| |||||| | | || || || |||| Sbjct 54631 TTAGAGAATCTTGCTTCTCGATTCATGTCAGATGTTCAAGTCTCGGAGGCGCGTGCTTTT 54572 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || |||||||| || || || ||||||||||| || ||||| ||||| || | ||| Sbjct 54571 TACGGATTTCAAATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGAT 54512 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 || || ||||||||| | |||| ||| | ||| || || ||||| | ||| Sbjct 54511 ACATATATCAAAGATAATAAAGAGAGAGATCATCTCTTTCGCGCAATTGAAACTATCCCT 54452 Query 44066 -GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 ||| ||| | |||||| | ||||| | | ||||| || | | | |||||| Sbjct 54451 TGCG-TTACGAAGAAAGCACAATGGGCGATGACTTGGATCGATGGATCTCAAACTTTTGC 54393 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGG 44183 |||||| | || || || || ||| ||||| || ||||| || || | | |||| Sbjct 54392 TGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTT- 54334 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | || || ||| |||||||||||||| | |||||||| || || || |||||||| ||| Sbjct 54333 CAATCTTCTGGCTAAAGAAACGAGGTCTCATGCCTGGTTTAACTTTCTCAAATGAACTAA 54274 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | ||| || ||||||||||| || ||||| |||||| Sbjct 54273 TCTCTCGAGACGAAGGCTTACACTGTGATTTCGCTTGC 54236 >seq11595 Length=173172 Score = 152 bits (168), Expect = 4e-32 Identities = 242/342 (71%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 |||||| || || ||||| || || || ||||||||||| || ||||| ||||| || | Sbjct 65206 TTTTTACGGATTCCAAATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTCCTTCT 65147 Query 44002 AGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT 44061 ||||| || ||||||||| | |||| ||| | ||| ||| || ||||| | Sbjct 65146 CGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCTATTGAAACTAT 65087 Query 44062 ACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 ||| ||| | | | ||||| | ||||| | | ||||| || | | | | | Sbjct 65086 TCCTTGCGTTGCGA-AGAAAGCTCAGTGGGCGATGACGTGGATCGATGGATCTCAAACCT 65028 Query 44121 TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTT 44179 | | |||||| | || || || || ||| ||||| || ||||| || || | | ||| Sbjct 65027 TCGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTT 64968 Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239 || | || || ||| ||||||||||||| | |||||||| || || || ||||| ||| Sbjct 64967 GCT-CTATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGATTAACTTTCTCAAACGAG 64909 Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||||| ||| || ||||||||||| |||||||| |||||| Sbjct 64908 TTAATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCTTGC 64867 >seq11600 Length=84080 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 40982 GATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 |||||| | |||| ||| ||| | || ||| ||| || ||||| ||| | || | Sbjct 22282 GATTAAGAACAATCCTGATGATCGAAGGATTATAATGTCGGCTTGGAATCCACCTGATCT 22223 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 | |||||||| | || || || ||| |||| ||||| || ||| |||||||| Sbjct 22222 TAAGCTGATGGCACTTCCTCCATGCCATATGTTTGCACAGTTCTATGTTGCAAATGGTGA 22163 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 ||| ||||||||| |||||||| | |||| || ||||| || || || ||||||||||| Sbjct 22162 ACTTTCATGTCAAATGTATCAACGCTCAGCCGATATGGGTCTTGGTGTGCCGTTTAACAT 22103 Query 41162 AGC 41164 || Sbjct 22102 TGC 22100 >seq10149 Length=112605 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 41080 AGTTTTACGTTTGCA-ATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 ||||||| ||| ||| | || ||||| ||||||||| |||||||| | |||| |||||| Sbjct 60725 AGTTTTATGTT-GCAGAAGGAGAACTCTCATGTCAAATGTATCAACGTTCAGCAGACATG 60783 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 ||||| || || || |||||||| || ||| |||| || || | |||| | || || Sbjct 60784 GGACTTGGTGTACCATTTAACATTGCTTCTTACTCTCTTCTTACTTGTATGTTAGCTCAT 60843 Query 41199 GT 41200 || Sbjct 60844 GT 60845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397399252598575