Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9060 134 2e-26 seq5306 123 3e-23 seq11467 118 1e-21 seq8589 118 1e-21 seq9133 113 6e-20 seq9146 104 3e-17 seq11595 98.7 1e-15 >seq9060 Length=178556 Score = 134 bits (148), Expect = 2e-26 Identities = 200/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| ||||||||||||||||||||| || Sbjct 23188 AAACCCATCCATCTCAGTTAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCCT-- 23131 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | || || |||||||||||||||||||| |||||| Sbjct 23130 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAATACAATA 23071 Query 11657 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| || | ||||| | ||| | ||| || |||||||||| Sbjct 23070 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACAC 23013 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 ||||||| | ||| ||||| | | || | || | |||||| ||| || ||| | Sbjct 23012 CAACAAAAAGCTCAACAAACTCCGAAGCCGCACAAGAAAAGAATGGTACACCTGCTTCTC 22953 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| || | || ||||| || ||||| || Sbjct 22952 CAGCCACAGCTCTAGCCAATAGAGTCTTACCTGTACCAGG 22913 >seq5306 Length=3186 Score = 123 bits (136), Expect = 3e-23 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | || || || |||| || | || ||||| | | ||||| Sbjct 818 TCAAGAATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAAA 759 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | ||| |||||||| |||||||| || | Sbjct 758 CCATCCATCTCAGTTAGGAGCTGATTGAGTGTCTGTTCTCTTTCATCATTACCTCC---A 702 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || ||||||||||| ||||||| || ||||| || Sbjct 701 CCAATTCCGGTTCCTCTTTGCCTACCAACCGCATCAATTTCATCAACAAACACAATGCAA 642 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || || || ||| | | || |||||||| || ||| ||||| ||||| ||| Sbjct 641 GGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAAGCACCAACACCGACA 582 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | ||||| || ||| || ||| | |||||| || Sbjct 581 AACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCA 522 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 |||||| || | || || || || ||||| || ||| || || | ||| Sbjct 521 ATGGCTTTTGCCAAAAGAGTTTTACCAGTACCAGGAGGACCAATAAGGAGAACACCTTTC 462 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 || |||||||||||| || ||||||| |||| ||| ||||| || || Sbjct 461 GGAATCTTGGCACCAACAGCAGTGAATCTCTCAGGTTTCTTCAGAAACTCAAC 409 >seq11467 Length=72189 Score = 118 bits (130), Expect = 1e-21 Identities = 196/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | || |||||||| ||||| ||||| ||||||||| | | Sbjct 11674 AACCCATCCATCTCCGTCAATAGCTGATTAATCGTTTGCTCTCTTTCATCATTTCC--AC 11617 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| ||||| | | ||| | ||||| ||||||||||||||||| || ||||||| Sbjct 11616 CTCCCATTCCAGCTCCTCTTTGTCTTCCCACAGCATCAATCTCATCAATAAACACAATAC 11557 Query 11658 ATGGTTGATTTTCGCGGGCGATT--TCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 | || ||||| || || ||||| | ||| | |||||| ||||| || || Sbjct 11556 AAGG--AGCTTTCGACTTCGCTTTCTCAAACAAATCCCTAACCCTAGAAGCACCAACTCC 11499 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||| | ||| ||||| | | |||| || | ||| || || | |||||| Sbjct 11498 AACAAAAAGCTCAACAAACTCAGAAGCAGCACATGAAAAGAACGGTACTCCGGCTTCACC 11439 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | || |||||||| |||||||| Sbjct 11438 AGCAACAGCTCTAGCTAATAGAGTCTTTCCTGTACCTGG 11400 >seq8589 Length=45551 Score = 118 bits (130), Expect = 1e-21 Identities = 196/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | || |||||||| ||||| ||||| ||||||||| | | Sbjct 11674 AACCCATCCATCTCCGTCAATAGCTGATTAATCGTTTGCTCTCTTTCATCATTTCC--AC 11617 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| ||||| | | ||| | ||||| ||||||||||||||||| || ||||||| Sbjct 11616 CTCCCATTCCAGCTCCTCTTTGTCTTCCCACAGCATCAATCTCATCAATAAACACAATAC 11557 Query 11658 ATGGTTGATTTTCGCGGGCGATT--TCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 | || ||||| || || ||||| | ||| | |||||| ||||| || || Sbjct 11556 AAGG--AGCTTTCGACTTCGCTTTCTCAAACAAATCCCTAACCCTAGAAGCACCAACTCC 11499 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||| | ||| ||||| | | |||| || | ||| || || | |||||| Sbjct 11498 AACAAAAAGCTCAACAAACTCAGAAGCAGCACATGAAAAGAACGGTACTCCGGCTTCACC 11439 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | || |||||||| |||||||| Sbjct 11438 AGCAACAGCTCTAGCTAATAGAGTCTTTCCTGTACCTGG 11400 >seq9133 Length=41873 Score = 113 bits (124), Expect = 6e-20 Identities = 195/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| |||||||||||||||||||| | Sbjct 23983 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCTCTCTCATCATTACC--A 23926 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | |||| | ||||| ||||||||||||||||| || |||||| Sbjct 23925 CCTCCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATA 23866 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | || | ||||| | ||| | ||| || ||||| ||||| Sbjct 23865 CAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACC 23807 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||| | ||| ||||| | | |||| || | ||| || ||| | ||| || Sbjct 23806 AACAAAAAGCTCAACAAACTCCGAAGCAGCACATGAAAAGAACGGTACACCAGCTTCGCC 23747 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | || ||||| || ||||| || Sbjct 23746 AGCAACAGCTCTAGCTAAAAGCGTCTTCCCTGTACCCGG 23708 >seq9146 Length=70564 Score = 104 bits (114), Expect = 3e-17 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || |||||||||||||| || ||| ||||||||||| || ||| Sbjct 54258 CCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGGCATGAGACCTCGTTTC 54317 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | || || ||||||||||||||||| || ||||| || || Sbjct 54318 TTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 54377 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | ||||| || || | |||| | |||| | ||| |||| ||||||| Sbjct 54378 GCTACGATTCGTTCAGCAAAAGTTTGAGA---TCCATCGATCCAAGTCATCGCCCATTGT 54434 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTT 122884 || |||||| || || || | ||||| Sbjct 54435 GCTTTCTTCGTAACGCAAGGGATAGTTT 54462 >seq11595 Length=173172 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | || |||||||| || || |||||||| || || ||| Sbjct 64889 CCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTC 64948 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | |||| ||| || ||||||||||||||||| || ||||| || || Sbjct 64949 TTTAGCCAGAAGATAGAGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 65008 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | ||||| ||||||| |||| | |||| | ||| |||| ||||| | Sbjct 65009 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCATCGATCCACGTCATCGCCCACTGA 65065 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTT 122884 || |||||| ||| || || | ||||| Sbjct 65066 GCTTTCTTCGCAACGCAAGGAATAGTTT 65093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627940032564000