Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9146 109 7e-19 seq11595 91.5 2e-13 seq9133 91.5 2e-13 >seq9146 Length=70564 Score = 109 bits (120), Expect = 7e-19 Identities = 138/189 (73%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| |||||||| ||||| | ||| ||||||||||| || ||| Sbjct 54258 CCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGGCATGAGACCTCGTTTC 54317 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | |||||| || ||||||||||| || || ||||| ||||| Sbjct 54318 TTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 54377 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || || |||||||| | | || | ||| | ||| |||||||||| || Sbjct 54378 GCTACGATTCGTTCAGCAAAAGTTTGAGA---TCCATCGATCCAAGTCATCGCCCATTGT 54434 Query 130214 GCCTTTTTC 130222 || || ||| Sbjct 54435 GCTTTCTTC 54443 >seq11595 Length=173172 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || ||||| | || |||||||| || || ||| Sbjct 64889 CCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTC 64948 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | ||||| || ||||||||||| || || ||||| ||||| Sbjct 64949 TTTAGCCAGAAGATAGAGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 65008 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || || ||||| |||| | || | ||| | |||| ||||||||||||| Sbjct 65009 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCATCGATCCACGTCATCGCCCACTGA 65065 Query 130214 GCCTTTTTC 130222 || || ||| Sbjct 65066 GCTTTCTTC 65074 >seq9133 Length=41873 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || ||||| || |||||||| | |||||||| || Sbjct 23983 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCTCTCTCATCATTACCA-- 23926 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | |||| | || || || ||||| ||||| || || || ||| Sbjct 23925 CCTCCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATA 23866 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || ||||| | ||| | ||||| ||||| ||||| Sbjct 23865 CAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACC 23807 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||||| | ||| ||||| | | || | |||| | ||| || || || ||| || Sbjct 23806 AACAAAAAGCTCAACAAACTCCGAAGCAGCACATGAAAAGAACGGTACACCAGCTTCGCC 23747 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || |||||||| || || ||| Sbjct 23746 AGCAACAGCTCTAGCTAAAAGCGTCTTCCCTGTACCCGGT 23707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618344637895400