Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11595 150 2e-31 seq9146 140 4e-28 seq5306 123 3e-23 seq9133 122 1e-22 seq11467 114 2e-20 seq8589 114 2e-20 seq9060 104 3e-17 >seq11595 Length=173172 Score = 150 bits (166), Expect = 2e-31 Identities = 491/755 (65%), Gaps = 11/755 (1%) Strand=Plus/Minus Query 94382 TGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT- 94440 ||||||| | | || ||||| ||||||| | |||||||| || | || | | Sbjct 65441 TGTTCCCAATTCACTACCCACAGATCTGGGAGATGTATAAGAAAGC-CGAAGCATCGTTC 65383 Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACG--ATTGGAAGACTCTAAATG 94498 |||||||||||||| |||||||| ||| | || ||||| ||||| ||| |||||| | Sbjct 65382 TGGACTGCTGAAGAAGTAGATCTATCACAAGAC--GGACGCGATTGGGAGAATCTAAACG 65325 Query 94499 AAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTG 94558 | ||| | || || ||| || |||| || ||||| |||| || |||||||| | Sbjct 65324 ACGGCGAACGTCACTTTATCAAACACGTCCTCGCTTTCTTCGCTGCTTCAGATGGAATCG 65265 Query 94559 TTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCC 94617 |||| |||||| || | | | | | | || || ||| ||| || ||| | | Sbjct 65264 TTTTAGAGAATCTCGCTTCTCGATTCATGTCA-GATGTACAAGTCTCGGAGGCGCGTGCT 65206 Query 94618 TTCTATGCGTATCAGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATA 94677 || || | | || | ||| | | ||| |||| || ||| || | Sbjct 65205 TTTTACGGATTCCAAATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTC 65146 Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 || | ||||| || ||| |||| | || |||||| || || |||| || Sbjct 65145 GATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCTATTGAAACTATT 65086 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 || || || |||||||| | ||||| |||| |||| | ||| | || | || Sbjct 65085 CCTTGCGTTGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGATGGA---TCTCAAACC 65029 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| ||| || | || || || |||||||| |||||||||||||| ||| ||| Sbjct 65028 TTCGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTT 64969 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||| |||| | ||||| ||||| ||||| |||||||| || | ||||| |||||| Sbjct 64968 TGCTCTATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGATTAACTTTCTCAAACGAG 64909 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTG 94977 | |||||||| ||||| || | ||| || || || |||| | | || Sbjct 64908 TTAATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCTTGCCTTCTTTACTCGCTCTTA 64849 Query 94978 CGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAG 95037 | | || | |||| ||| | | | || || || || || || |||||||| Sbjct 64848 AGAACAAAGCTAACGGAGGAGCGTGTAAAATCAATCGTCTGCGACGCAGTAGAGATTGAA 64789 Query 95038 AAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATG 95097 | || || ||| || || ||||||||||| | | || ||||| ||| |||| Sbjct 64788 AGAGAGTTTGTATGCGACGCGCTTCCATGCGCGTTAGTTGGAATGAACCGTGAGTTAATG 64729 Query 95098 TCTGAATATATTGAGTATGTATCTGATAGATTGTT 95132 | | ||||| |||| ||| |||||||| |||| Sbjct 64728 AGTCAGTATATCGAGTTTGTTGCTGATAGACTGTT 64694 >seq9146 Length=70564 Score = 140 bits (154), Expect = 4e-28 Identities = 394/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Minus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404 || || || ||| | || |||| ||||||| | |||| || | | |||||||| Sbjct 54847 GAGCCACTTCTAACTCCGACACCGGACAGATTCTGTATGTTTCCGATTCATTATCCACAG 54788 Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 94463 ||||||| | || ||||| || | || | | | ||||| || ||||| |||||||| Sbjct 54787 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCATTCTGGACCGCCGAAGAAGTAGATCT 54729 Query 94464 CTCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAA 94521 ||| | || ||||| ||||| ||| |||||| || |||| | ||||| ||| Sbjct 54728 ATCACATGAC--GGACGTGATTGGGAGAATCTAAACGACGGTGAACGTCACTTCATCAAA 54671 Query 94522 TACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAA-CAA 94580 || | || || || || |||| ||| |||||||| ||||| |||||| | | | | Sbjct 54670 CACGTTCTCGCTTTTTTCGCTGCATCAGATGGAATCGTTTTAGAGAATCTTGCTTCTCGA 54611 Query 94581 CTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAA 94640 | | | || || ||| ||| || ||| | | || || | | ||| | Sbjct 54610 TTCATGTCA-GATGTTCAAGTCTCGGAGGCGCGTGCTTTTTACGGATTTCAAATCGCGAT 54552 Query 94641 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 94700 ||| | | ||| |||| || ||| || | || | ||||| || ||| | Sbjct 54551 TGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGATACATATATCAAAGATAATAA 54492 Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760 |||| | || |||||| || || |||| | || || || |||||||| | Sbjct 54491 AGAGAGAGATCATCTCTTTCGCGCAATTGAAACTATCCCTTGCGTTACGAAGAAAGCACA 54432 Query 94761 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820 ||||| |||| ||| | ||| | || | | |||||||| ||| || | || || Sbjct 54431 ATGGGCGATGACTTGGATCGATGGA---TCTCAAACTTTTGCTGAACGAATCGTAGCTTT 54375 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 || |||||||| |||||||||||||| ||| ||| || | || | ||||| ||||| Sbjct 54374 CGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTTCAATCTTCTGGCTAAAGAA 54315 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||||||| ||| | ||||| || || || |||||||| ||||| || Sbjct 54314 ACGAGGTCTCATGCCTGGTTTAACTTTCTCAAATGAACTAATCTCTCGAGACGAAGG 54258 >seq5306 Length=3186 Score = 123 bits (136), Expect = 3e-23 Identities = 254/369 (69%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| || | || || || | || ||||| | ||||||||| || Sbjct 764 TCAAAACCATCCATCTCAGTTAGGAGCTGATTGAGTGTCTGTTCTCTTTCATCATTACCT 705 Query 9671 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 |||| || | | | |||| | || || |||||||| ||||||| || || Sbjct 704 CC---ACCAATTCCGGTTCCTCTTTGCCTACCAACCGCATCAATTTCATCAACAAACACA 648 Query 9728 ATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 9784 ||||| || || || || ||| ||| ||||| || || | ||| || || Sbjct 647 ATGCAAGGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCGCGGACTC--TTGAAGCACCA 591 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGA 9843 ||||| ||||||||||| ||||| | | | || || | || ||| || ||| || Sbjct 590 ACACCGACAAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGC 532 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 9903 |||||| ||||||||| || | |||||| ||||| ||||| || ||| ||||| Sbjct 531 TTCACCAGCAATGGCTTTTGCCAAAAGAGTTTTACCAGTACCAGGAGGACCAATAAGGAG 472 Query 9904 GGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATC 9963 ||||| ||||||||||| ||| || | |||||||||||| ||| ||||| || Sbjct 471 AACACCTTTCGGAATCTTGGCACCAACAGCAGTGAATCTCTCAGGTTTCTTCAGAAACTC 412 Query 9964 CACAATTTC 9972 || | ||| Sbjct 411 AACCACTTC 403 >seq9133 Length=41873 Score = 122 bits (134), Expect = 1e-22 Identities = 224/321 (70%), Gaps = 12/321 (4%) Strand=Plus/Minus Query 9574 ATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAA 9633 ||| ||||| || | |||| || ||| | | | | ||| ||||||||||| ||||| Sbjct 24022 ATTAGTCGCAGCCAACACAATAACACCAGAATTACCAGAAAACCCATCCATCTCAGTCAA 23963 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGT 9691 ||| || ||||| |||||||| | |||||||| | | | ||| ||||| | | | Sbjct 23962 AAGCTGATTAATCGTTTGTTCTCTCTCATCATTACC--ACCTCCCATTCCAGCTCCTCTT 23905 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 ||| | ||||| ||||||||||||||||| || || || || || ||||| || Sbjct 23904 TGCCTCCCCACAGCATCAATCTCATCAATAAACACAATACAAGG--AGCTTTCGACTTCG 23847 Query 9752 ACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 9807 || ||||| | ||||| || || || | || || ||||||||||| | ||| ||||| Sbjct 23846 CCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAACACCAACAAAAAGCTCAACAAA 23789 Query 9808 GTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 | | || | |||| | ||| || ||| || ||| || |||| |||| || | Sbjct 23788 CTCCGAAGCAGCACATGAAAAGAACGGTACACCAGCTTCGCCAGCAACAGCTCTAGCTAA 23729 Query 9868 AAGAGTCTTACCCGTACCTGG 9888 ||| ||||| || ||||| || Sbjct 23728 AAGCGTCTTCCCTGTACCCGG 23708 >seq11467 Length=72189 Score = 114 bits (126), Expect = 2e-20 Identities = 255/374 (68%), Gaps = 18/374 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| | ||| || | ||| | || |||||| | ||| | |||||| || Sbjct 11764 CGATCAAATCTACCAGGTCTAAGCAATGCAGAATCAAGAACATCTGGTCTATTCGTTGCA 11705 Query 9584 GCGATGACAACAATACCTGTTTCATTATCA---AAACCATCCATCTCTGTCAAAAGTTGG 9640 || | |||| || ||| | |||| || || ||||||||||| ||||| || || Sbjct 11704 GCCAACACAATAACACCAGA---ATTACCAGAGAACCCATCCATCTCCGTCAATAGCTGA 11648 Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9698 ||||| ||||| || | ||||||||| | | | ||| ||||| | | ||| ||| Sbjct 11647 TTAATCGTTTGCTCTCTTTCATCATTTCC--ACCTCCCATTCCAGCTCCTCTTTGTCTTC 11590 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 9756 |||| ||||||||||||||||| || || || || || ||||| || | || Sbjct 11589 CCACAGCATCAATCTCATCAATAAACACAATACAAGG--AGCTTTCGACTTCGCTTTCTC 11532 Query 9757 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 ||| | ||||| || || || | || || || |||||||| | ||| ||||| | | Sbjct 11531 AAACAAATCCC-TA-ACCCTAGAAGCACCAACTCCAACAAAAAGCTCAACAAACTCAGAA 11474 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 || | |||| | ||| || || | |||||| |||| |||| || | |||||| Sbjct 11473 GCAGCACATGAAAAGAACGGTACTCCGGCTTCACCAGCAACAGCTCTAGCTAATAGAGTC 11414 Query 9875 TTACCCGTACCTGG 9888 || || |||||||| Sbjct 11413 TTTCCTGTACCTGG 11400 >seq8589 Length=45551 Score = 114 bits (126), Expect = 2e-20 Identities = 255/374 (68%), Gaps = 18/374 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| | ||| || | ||| | || |||||| | ||| | |||||| || Sbjct 11764 CGATCAAATCTACCAGGTCTAAGCAATGCAGAATCAAGAACATCTGGTCTATTCGTTGCA 11705 Query 9584 GCGATGACAACAATACCTGTTTCATTATCA---AAACCATCCATCTCTGTCAAAAGTTGG 9640 || | |||| || ||| | |||| || || ||||||||||| ||||| || || Sbjct 11704 GCCAACACAATAACACCAGA---ATTACCAGAGAACCCATCCATCTCCGTCAATAGCTGA 11648 Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9698 ||||| ||||| || | ||||||||| | | | ||| ||||| | | ||| ||| Sbjct 11647 TTAATCGTTTGCTCTCTTTCATCATTTCC--ACCTCCCATTCCAGCTCCTCTTTGTCTTC 11590 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 9756 |||| ||||||||||||||||| || || || || || ||||| || | || Sbjct 11589 CCACAGCATCAATCTCATCAATAAACACAATACAAGG--AGCTTTCGACTTCGCTTTCTC 11532 Query 9757 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 ||| | ||||| || || || | || || || |||||||| | ||| ||||| | | Sbjct 11531 AAACAAATCCC-TA-ACCCTAGAAGCACCAACTCCAACAAAAAGCTCAACAAACTCAGAA 11474 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 || | |||| | ||| || || | |||||| |||| |||| || | |||||| Sbjct 11473 GCAGCACATGAAAAGAACGGTACTCCGGCTTCACCAGCAACAGCTCTAGCTAATAGAGTC 11414 Query 9875 TTACCCGTACCTGG 9888 || || |||||||| Sbjct 11413 TTTCCTGTACCTGG 11400 >seq9060 Length=178556 Score = 104 bits (114), Expect = 3e-17 Identities = 250/371 (67%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| | || || | | ||||| |||||| | ||| | |||||| || Sbjct 23277 CGATCAAACCTTCCAGGTCTCAATAGCGCAGAATCAAGAACATCTGGCCTATTCGTAGCT 23218 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| | ||| | | | | ||| ||||||||||| || || | || ||| Sbjct 23217 GCCAATACAATCACACCAGAGTTACCAGAAAACCCATCCATCTCAGTTAACAACTGATTA 23158 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 || |||||||| | |||||||| || | | ||| ||||| | | ||| | || | Sbjct 23157 ATCGTTTGTTCTCTCTCATCATTTCCT--CCTCCCATCCCAGCTCCTCTCTGCCTCCCAA 23100 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGC--GAGCGACTTCAAA 9759 | |||||||||||||||||||| || || || || |||||| ||| ||||| Sbjct 23099 CAGCATCAATCTCATCAATGAATACAATACAAGG--AGCTTTCGCCTTAGCCTTCTCAAA 23042 Query 9760 GAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 | ||||| || || || | || |||||||||||||| | ||| ||||| | | || Sbjct 23041 CAAATCCC-TA-ACTCTAGACGCACCCACACCAACAAAAAGCTCAACAAACTCCGAAGCC 22984 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | ||| | ||| || ||| | ||| || || | |||| || | ||||||||| Sbjct 22983 GCACAAGAAAAGAATGGTACACCTGCTTCTCCAGCCACAGCTCTAGCCAATAGAGTCTTA 22924 Query 9878 CCCGTACCTGG 9888 || ||||| || Sbjct 22923 CCTGTACCAGG 22913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583175388746600