Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq10149 93.3 3e-14 seq11600 86.0 5e-12 >seq10149 Length=112605 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 111696 AAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATG 111755 ||| ||| ||| ||||| || ||| || ||| ||||| ||||| || ||| ||| Sbjct 60933 AAGTTGTTCTTGCAAAGGTCTTACATGAGTTTTATACACATGAGCATCACCAATAACATG 60874 Query 111756 GATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTA 111815 || || || | ||| | | | || || || || | ||| | || || ||| ||| Sbjct 60873 TATAAAATCACCAGGAACAAGATCACAGACATGAGCTAACATACAAGTAAGAAGAGAGTA 60814 Query 111816 ACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACA 111875 | ||||||||||||||| ||||| || ||||| ||| | || | |||||| | ||||| Sbjct 60813 AGAAGCAATGTTAAATGGTACACCAAGTCCCATGTCTGCTGAACGTTGATACATTTGACA 60754 Query 111876 TGATAGTTTATTTTGTGACACATAAAATTGACAAAG 111911 ||| |||| || || |||||||| | |||||| Sbjct 60753 TGAGAGTTCTCCTTCTGCAACATAAAACT-ACAAAG 60719 >seq11600 Length=84080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 184/273 (67%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 111777 ACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCAC 111836 |||| |||||| || | ||| |||| || ||| ||| ||||||||||| ||||| Sbjct 22057 ACCACAGATGTGAGCGAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAACGGCAC 22116 Query 111837 ACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACAC 111896 ||| || |||||||| | || | |||||| | |||||||| |||| | | || || Sbjct 22117 ACCAAGACCCATATCGGCTGAGCGTTGATACATTTGACATGAAAGTTCACCATTTGCAAC 22176 Query 111897 ATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATA-AAG--GGTCC 111953 ||| || || || | ||| || ||||| | ||||||| || | | || || Sbjct 22177 ATAGAACTGTGCAAACATATGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGGTGGATT 22236 Query 111954 CCATGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATT 112013 ||| || |||| || ||||||| | |||| | | ||| | || || |||| Sbjct 22237 CCAAGCCGACATTATAATCCTTCGATCATCAGGATTGTTCTTAATCTTGTTAATTACATC 22296 Query 112014 CAAGAGCTGGTCTATCCCTTTACCAGTATAATC 112046 ||||||| || | || | |||||||||||| Sbjct 22297 TGAGAGCTGATCAAATCCATGACCAGTATAATC 22329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391889639354545