Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9146 93.3 5e-14 seq11595 89.7 6e-13 >seq9146 Length=70564 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/294 (68%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAA 59884 ||| || || |||| ||| ||| | |||||| | |||| ||| |||||| Sbjct 54545 TATTCATTCTGAGATGTATAGTCTCCTTCTCGATACATATATCAAAGATAATAAAGAGAG 54486 Query 59885 GGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 | | ||| || || || || || || |||| || |||| | |||||| |||||| Sbjct 54485 AGATCATCTCTTTCGCGCAATTGAAACTATCCCTTGC-GTTACGAAGAAAGCACAATGGG 54427 Query 59944 CCATGCAGTGGAT-GAGTCCTGGAGC---ATCATTTGCACAACGTCTCATAGCTTTTGCA 59999 | ||| ||||| || |||| | | | ||||| |||| || ||||||| || Sbjct 54426 CGATGACTTGGATCGA----TGGATCTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCT 54371 Query 60000 TGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGT 60059 || || ||||| ||||||||||| || || ||| | || |||||||| || || || Sbjct 54370 TGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 54311 Query 60060 GGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 || |||||||| || | | |||||| || || || || || || ||||| ||| Sbjct 54310 GGTCTCATGCCTGGTTTAACTTTCTCAAATGAACTAATCTCTCGAGACGAAGGC 54257 >seq11595 Length=173172 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 |||| || ||||||| || || || ||||| ||||||||||| || || || ||| Sbjct 65021 AACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGCTCTA 64962 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | |||||||| || || || || |||||||| || | | |||||| |||||| | || | Sbjct 64961 TCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGATTAACTTTCTCAAACGAGTTAATCT 64902 Query 60100 CCCGGGACGAGGGC 60113 | || ||||| ||| Sbjct 64901 CTCGAGACGAAGGC 64888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548444475399600