Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq8798 143 2e-29 seq10330 118 7e-22 seq9990 118 7e-22 seq8641 118 7e-22 >seq8798 Length=192640 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || |||||||||||| ||||||||||||||| || || | Sbjct 21551 CCACCTCTGAGACGAAGTACTAAATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCG 21492 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | | || || || || ||||||||||| || | | ||| |||||||| || Sbjct 21491 AGTGTTCTCCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 21432 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || ||| | ||| ||||| |||||| || Sbjct 21431 ATCCCTTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 21373 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| ||||| | || || |||||||||||||| Sbjct 21372 TTCCAAAGTGATTGTTTTGCCGGTAAGGGTCTTGACAAAAATCTGCAT 21325 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||||||||||| ||| || || ||||| || || | Sbjct 21095 CCACCACGAAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCG 21036 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| || || |||||||| || || | | ||| || || || || Sbjct 21035 AGTGTTCTTCCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGATCGGGAGGG 20976 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | || ||| | ||| ||||| |||||| || Sbjct 20975 ATACCTTCCTTGTCCTGGAT-TTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 20917 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| ||||| | || || ||||| |||||||| Sbjct 20916 TTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 20869 Score = 91.5 bits (100), Expect = 9e-14 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 34460 AAATACATATC-CAATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCC 34518 ||| ||||| | || ||| || || | |||||| | ||||| || ||||| ||| Sbjct 21800 AAAAACATAGCTCAGACGTTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGATTCC 21741 Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 || || ||||| ||||| | | ||| || | || || || ||||| || || || || Sbjct 21740 TTCTGGATGTTGTAATCAGCCAATGTCCGACCATCCTCTAGCTGTTTCCCAGCGAAGATG 21681 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AA 34637 | | |||||||||||| || | || |||||||| ||| || | || ||| | Sbjct 21680 AGTCTCTGTTGGTCCGGTGGGATCCCTTCCTTGTC-CTGAATCTTAGCCTTGACGTTGTC 21622 Query 34638 AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 ||| ||||| |||||| || || | |||||| || || || || || || || ||||| Sbjct 21621 AATAGTGTCCGAGCTCTCAACCTCTAAGGTTATTGTCTTGCCTGTCAAAGTCTTGACAAA 21562 Query 34698 AATCTGCAT 34706 || ||||| Sbjct 21561 TATTTGCAT 21553 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | ||||| || || || ||||| || ||||||||||| | Sbjct 21323 CCACCTCTTAATCGTAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAATCAGCC 21264 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || ||||| ||||| || | | ||| |||||||| || Sbjct 21263 AAAGTCCGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 21204 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | ||| || | ||| |||||| |||||| || Sbjct 21203 ATCCCTTCCTTGTC-CTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 21145 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || || | || || ||||| |||||||| Sbjct 21144 CTCCAAAGTAATAGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 21097 >seq10330 Length=49715 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || ||||||||||||||| || || | |||||| || Sbjct 15241 AGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGCAAGTGTGCGA 15300 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| |||||||| || | || ||| Sbjct 15301 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCC 15360 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| ||||| |||||| || |||| || Sbjct 15361 TTGTCTTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCTACCTCCAATGT 15419 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || |||||||| |||||||| Sbjct 15420 GATGGTCTTGCCGGTCAGTGTCTTCACAAAGATCTGCAT 15458 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| ||||| | ||||||||| | ||||||||||| || ||||| || Sbjct 15723 CTCCTTCTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGTTGCTTTCCGGCGAA 15782 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| ||||| || || | |||||||| ||| |||| || | |||||| Sbjct 15783 GATCAATCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGGATC-TTGGCCTTAACGT 15841 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| |||||| || || | || ||||| || || ||||| || || | Sbjct 15842 TGTCGATGGTGTCAGAGCTCTCTACCTCGAGAGTAATCGTCTTTCCTGTTAAGGTCTTAA 15901 Query 34694 CAAAAATCTGCAT 34706 | || || ||||| Sbjct 15902 CGAAGATTTGCAT 15914 >seq9990 Length=160576 Score = 118 bits (130), Expect = 7e-22 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || | ||||||||| ||||| || || || |||||||||||| || || || | Sbjct 159424 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCC 159483 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| | || ||||||||||||| || ||||| || || || | ||| |||||||| | Sbjct 159484 AAAGTCCT-GC-CGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTG 159541 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | |||||||| ||| ||| ||| | |||||| | || ||||| |||||| Sbjct 159542 GGATACCCTCCTTATCTTGGAT-TTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCT 159600 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || || || || || || ||||| || ||||| ||||| Sbjct 159601 ACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 159650 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTC 34546 ||||| | ||||| || || || |||||| || ||||| || || | |||||| | Sbjct 158521 AGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCCAAAGTG--C 158578 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || || || || || | |||||| |||||||| || | |||| Sbjct 158579 GTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCT 158638 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACG 34665 | ||||| |||||| | || || | ||| ||||| ||||||||| |||| Sbjct 158639 CTTTGTCCTGGATCTTG-GCCTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAGT 158697 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | || ||||||||||||||||| Sbjct 158698 GTGATGGTCTTCCCGGTCAGTGTCTTCACAAAAATCTGCAT 158738 >seq8641 Length=178042 Score = 118 bits (130), Expect = 7e-22 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || | ||||||||| ||||| || || || |||||||||||| || || || | Sbjct 1153 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCC 1094 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| | || ||||||||||||| || ||||| || || || | ||| |||||||| | Sbjct 1093 AAAGTCCT-GC-CGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTG 1036 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | |||||||| ||| ||| ||| | |||||| | || ||||| |||||| Sbjct 1035 GGATACCCTCCTTATCTTGGAT-TTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCT 977 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || || || || || || ||||| || ||||| ||||| Sbjct 976 ACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 927 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTC 34546 ||||| | ||||| || || || |||||| || ||||| || || | |||||| | Sbjct 2056 AGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCCAAAGTG--C 1999 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || || || || || | |||||| |||||||| || | |||| Sbjct 1998 GTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCT 1939 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACG 34665 | ||||| |||||| | || || | ||| ||||| ||||||||| |||| Sbjct 1938 CTTTGTCCTGGATCTTG-GCCTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAGT 1880 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | || ||||||||||||||||| Sbjct 1879 GTGATGGTCTTCCCGGTCAGTGTCTTCACAAAAATCTGCAT 1839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314684663989595