Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11021 140 2e-28 seq8634 129 4e-25 seq10212 127 1e-24 seq9253 125 5e-24 seq8726 107 1e-18 seq10330 102 6e-17 seq8798 102 6e-17 seq11704 95.1 8e-15 seq9269 93.3 3e-14 seq9990 89.7 3e-13 seq8641 89.7 3e-13 >seq11021 Length=502384 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| |||||||| || || |||||||| ||||| ||| | Sbjct 216924 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACTATTACTCTCGAGGTTGAGTCCTCT 216983 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | || ||||| ||||| |||| || || || Sbjct 216984 GACACCATCGACAATGTCAAAGCGAAGA-TTCAAGACAAGGAAGGAATACCACCGGACCA 217042 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || ||||| ||||| |||||||||||||||| || ||| | | || ||||| Sbjct 217043 GCAGCGATTGATATTCGCCGGGAAACAACTGGAAGACGGCCGTACTCTGGCTGACTACAA 217102 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | ||| | ||| Sbjct 217103 CATCCAGAAGGAATCGACGCTTCATCTCGTT 217133 >seq8634 Length=210279 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| || ||||| || || || ||||| || | Sbjct 12243 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCATCC 12184 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | ||||| ||||| | || || ||||| Sbjct 12183 GACACAATCGACAATGTGAAAGCGAAGA-TCCAAGACAAGGAAGGAATCCCACCGGATCA 12125 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || ||||| ||||| |||||| | ||||||| | | ||| | | ||||||||| Sbjct 12124 GCAGCGATTGATATTCGCCGGAAAACAATTAGAAGACGGAAGGACTCTCGCCGATTACAA 12065 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || || | ||||| || || | || ||||||| Sbjct 12064 CATCCAGAAGGAATCAACGCTTCATTTGGTGCTACGTCTGAGAGGAGG 12017 >seq10212 Length=148016 Score = 127 bits (140), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| ||||| ||||| || || ||||| ||| Sbjct 127607 AAAATGCAGATCTTCGTCAAAACCCTAACGGGTAAAACAATCACACTTGAGGTTGAGTCC 127666 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || || ||||| ||||| | || || || Sbjct 127667 TCTGACACCATCGACAATGTGAAAGC-TAAGATCCAAGACAAGGAAGGCATCCCACCGGA 127725 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||||| || || ||||| ||||| || ||||||| || ||| | | || || Sbjct 127726 TCAGCAACGTTTGATTTTCGCCGGGAAACAGCTTGAAGACGGCCGTACTCTCGCTGACTA 127785 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || || || || | ||||| ||| Sbjct 127786 CAACATCCAGAAGGAATCAACGCTTCATTTGGTT 127819 >seq9253 Length=129212 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || || || || || || || || || Sbjct 94628 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACACTAGAGGTAGAATCA 94687 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | ||||||||||| | || || || Sbjct 94688 TCAGACACAATCGACAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGAATCCCACCGGA 94746 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||||| || || || ||||| |||||| ||||||||| | || | | |||||| Sbjct 94747 TCAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGACGGTAGAACACTCGCCGATTA 94806 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || ||||| || || | ||||| || Sbjct 94807 CAACATCCAGAAAGAATCAACGCTTCATTTGGT 94839 >seq8726 Length=217380 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || || || || | || ||||| || Sbjct 142733 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCA 142674 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | ||||| ||||| | || || || Sbjct 142673 TCTGACACAATCGACAATGTGAAAGCGAAGA-TCCAAGACAAGGAAGGAATCCCACCGGA 142615 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | || || || ||||| || ||||||||||||| | | || | | ||||| Sbjct 142614 TCAGCAGAGATTGATCTTCGCCGGAAAGCAACTGGAAGACGGAAGAACACTCGCGGATTA 142555 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| || || || Sbjct 142554 CAACATCCAAAAGGAATCGAC 142534 >seq10330 Length=49715 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| || || ||||| || ||||| || || || || | | Sbjct 16142 ATGCAGATCTTCGTTAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 16083 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || |||| | || | | ||||||||||| | || |||||||| Sbjct 16082 GACACTATCGACAACGTTAAGGCTAAGA-TCCAGGACAAAGAAGGCATTCCTCCAGATCA 16024 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| | || |||| || ||||| | ||||| || Sbjct 16023 GCAGAGACTTATCTTTGCTGGAAAACAGTTAGAGGACGGCCGTACTTTGGCTGATTATAA 15964 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || | ||||| ||| | ||| | || || || Sbjct 15963 TATCCAGAAAGAATCAACTCTTCATTTGGTTCTCAGGCTTCGTGGTGG 15916 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| ||| | || ||||| ||||| |||||||| || || | | Sbjct 15914 ATGCAAATCTTCGTTAAGACCTTAACAGGAAAGACGATTACTCTCGAGGTAGAGAGCTCT 15855 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || | | || || || ||| | || ||||| || Sbjct 15854 GACACCATCGACAACGTTAAGGCCAAGA-TCCAAGATAAGGAGGGTATCCCACCAGACCA 15796 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || ||||| ||||| | || || | | |||||||| Sbjct 15795 GCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGATGGCCGAACACTTGCTGATTACAA 15736 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| ||| | ||| | ||| | ||| | || || || Sbjct 15735 CATCCAGAAGGAGTCTACACTTCATCTTGTTCTCAGGCTCCGTGGTGG 15688 >seq8798 Length=192640 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || ||||| |||||| | |||||||| | | Sbjct 20869 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTTGAGAGCTCT 20928 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||||| ||||| |||||| | || || ||||| Sbjct 20929 GACACTATTGACAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATCCCTCCCGATCAG 20988 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || || || ||||| | | | || | | || |||||| Sbjct 20989 CAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGAAGAACACTCGCTGACTACAAC 21048 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| | ||||| || Sbjct 21049 ATCCAGAAAGAGTCCACTCTCCATTTGGT 21077 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| ||||| || || || ||||||||||| || || | | Sbjct 20641 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 20700 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| |||| | ||| ||| || || ||||| | || ||||| || Sbjct 20701 GATACCATCGACAATGTTAAGGC-AAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCA 20759 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | ||||| || || || ||||| || ||||| | || || || | |||||||| Sbjct 20760 GCAAAGATTAATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACAA 20819 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| || || | || || ||| Sbjct 20820 TATTCAGAAAGAATCAACCCTGCACTTGGTT 20850 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || ||||| |||||| | |||||||| | | Sbjct 21325 ATGCAGATTTTTGTCAAGACCCTTACCGGCAAAACAATCACTTTGGAAGTTGAGAGCTCT 21384 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||| ||||| | || || || || Sbjct 21385 GACACTATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACCAG 21444 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| || || || || || | | || | | || |||||| Sbjct 21445 CAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGGAGAACACTCGCTGACTACAAC 21504 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| | |||||||| Sbjct 21505 ATTCAAAAGGAGTCCACTCTCCATTTAGT 21533 >seq11704 Length=175292 Score = 95.1 bits (104), Expect = 8e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| |||| ||||||||||| || | |||||||| || |||||||| ||| Sbjct 63403 GACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTTGAA 63462 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | || |||| |||||||| || || |||||||| || | ||| | || || Sbjct 63463 GATGGTAGAACCTTAGCTGATTACAATATCCAGAAAGAGTCTACTCTTCATCTTGTATTG 63522 Query 23824 AG 23825 || Sbjct 63523 AG 63524 >seq9269 Length=281999 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| |||| || |||||||| | | |||||||| || || ||||| ||| Sbjct 49633 GACAAAGAAGGTATACCACCTGATCAACAAAGGCTCATATTTGCTGGTAAGCAACTTGAA 49692 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | ||||||| ||||||||||| || |||||||| || | ||| | || || Sbjct 49693 GATGGTAGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACTCTTCATCTTGTCTTG 49752 Query 23824 AGGTTGCGAGGAGG 23837 ||| | |||| || Sbjct 49753 AGGCTTAGAGGTGG 49766 >seq9990 Length=160576 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || || || ||||| || || || || | | Sbjct 158738 ATGCAGATTTTTGTGAAGACACTGACCGGGAAGACCATCACACTGGAGGTGGAGAGCTCT 158679 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | |||||||| ||| | || || || || Sbjct 158678 GACACGATTGACAATGTGAAGGCCAAGA-TCCAGGACAAAGAGGGTATTCCTCCGGACCA 158620 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || || | ||||||||| | || ||||| Sbjct 158619 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTTTGGCTGACTACAA 158560 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || ||||| || Sbjct 158559 CATACAGAAGGAGTCAAC 158542 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||||||| | || ||||| || |||||| | || || || | | Sbjct 159650 ATGCAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACTTTGGAGGTAGAGAGCTCT 159591 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | ||||| || || || ||| | || || || || Sbjct 159590 GACACCATCGACAACGTTAAGGC-GAAAATCCAAGATAAGGAGGGTATCCCACCGGACCA 159532 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || ||||| ||||||| | ||||| | || ||||| Sbjct 159531 GCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTACAA 159472 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 159471 TATTCAAAAGGAGTCAAC 159454 >seq8641 Length=178042 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||||||| | || ||||| || |||||| | || || || | | Sbjct 927 ATGCAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACTTTGGAGGTAGAGAGCTCT 986 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | ||||| || || || ||| | || || || || Sbjct 987 GACACCATCGACAACGTTAAGGC-GAAAATCCAAGATAAGGAGGGTATCCCACCGGACCA 1045 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || ||||| ||||||| | ||||| | || ||||| Sbjct 1046 GCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTACAA 1105 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 1106 TATTCAAAAGGAGTCAAC 1123 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || || || ||||| || || || || | | Sbjct 1839 ATGCAGATTTTTGTGAAGACACTGACCGGGAAGACCATCACACTGGAGGTGGAGAGCTCT 1898 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | |||||||| ||| | || || || || Sbjct 1899 GACACGATTGACAATGTGAAGGCCAAGA-TCCAGGACAAAGAGGGTATTCCTCCGGACCA 1957 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || || | ||||||||| | || ||||| Sbjct 1958 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTTTGGCTGACTACAA 2017 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || ||||| || Sbjct 2018 CATACAGAAGGAGTCAAC 2035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337961340151220