Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9146 123 2e-23 seq10889 87.8 2e-12 >seq9146 Length=70564 Score = 123 bits (136), Expect = 2e-23 Identities = 570/890 (64%), Gaps = 21/890 (2%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||||||||| || || || |||||||| || |||||||| |||| || || ||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||| ||||||||||||| || | ||| || | || ||| | || | Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCAT 54064 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 |||| || || ||||| || |||||||| ||||| || || | ||| ||||||| || Sbjct 54065 TAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAA 54124 Query 4436 TCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | | || || ||||||| | ||||||| ||| || || || || || | Sbjct 54125 -CGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGA 54183 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-----CA 4549 | || | |||| | | || || || | || | | || | || Sbjct 54184 TTGACTTCACGCGCTCTTCCGTAAGCTTCGTT-CTCA----ACAGAGAGTAGAGAAGGCA 54238 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 || |||||||| || || |||||||||| || ||||| || || || ||||| || Sbjct 54239 AGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACC 54298 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 ||||| | ||||| || || ||||| || || | ||| || || ||||| || Sbjct 54299 AGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGAT 54358 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAAT 4729 ||||| || || || ||||| | || | | | | || | | | | | || Sbjct 54359 ACCTTCAACACAAGCGAAAGCTACGATTC--GTTCAGCAAAAGTTTGAGAT-CCATCGAT 54415 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| | | ||||| | ||||| ||| ||||||| || || || | || ||| ||| Sbjct 54416 CCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAA 54475 Query 4790 TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | | | | || |||| ||||| || || | || || |||||||| || Sbjct 54476 GAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTC 54535 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTACTT 4908 |||||| ||||| || || || || |||||||||| ||||||| | || || | |||| Sbjct 54536 AGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCA-CGCGCCTCCGAGACTT 54594 Query 4909 GAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 |||| || | ||| |||| | | || || || || || || || || Sbjct 54595 GAACATC-TGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCG 54653 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGG 5027 ||||| || | ||| || || |||| |||| | || || || | ||| | Sbjct 54654 AAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCA 54713 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | || | | || ||| |||||||| | ||||| || || ||||| ||||| ||| Sbjct 54714 CGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTG 54773 Query 5088 TACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGT 5136 ||||| ||| || | ||||| |||||||||| || ||| ||||||| Sbjct 54774 TACATCTCCCAGATCTGTGGATAATGAATCGGAAACAT-ACAGAATCTGT 54822 >seq10889 Length=437650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| | || ||||| |||||||| | ||||||||||| || ||||||||||| | Sbjct 284992 ACAAGAGGCAAGCAAAGTCACAATGGAGTCCTTCGTCTCTCGATATAAGTTCGTTAGAGA 285051 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 | ||||| || ||||| | ||||||||| |||||||| || || || Sbjct 285052 ATGTTAAACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGC 285097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426988627326095