Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11595 205 1e-47 seq9146 159 5e-34 seq11110 122 1e-22 seq8766 118 1e-21 seq11555 95.1 2e-14 >seq11595 Length=173172 Score = 205 bits (226), Expect = 1e-47 Identities = 406/591 (69%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || | ||||| |||| | ||||| ||||| || || || | Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||| ||||| ||||| || ||||| || || | || |||| | || || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || ||||| || || || || || | || || | | | | | | | Sbjct 64987 GATACCTTCAACACAAGCGAAAGC--TACGATTCGTTCAGCGAAGGTTTGAGATCCATCG 65044 Query 48318 ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 |||||| || | ||||| | ||| |||||| || ||||| || ||||| |||||| Sbjct 65045 ATCCAC-GTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACG 65103 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||||||| | | | || ||| ||||||| | |||||||| | | ||||||||||| Sbjct 65104 AAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACAT 65163 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || |||||||| ||||| || || || |||||||||||| | ||| || | || Sbjct 65164 CTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGAC 65223 Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||||| || | ||| ||||| ||| | |||||| || |||||||| ||||| Sbjct 65224 TTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAG 65282 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || || || | || ||||| ||||| | |||| | | || || | ||| | Sbjct 65283 CGAAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAAT 65342 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | |||| ||||| ||||||||||||||| ||||| || ||||| || ||||| | Sbjct 65343 CGCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCT 65402 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTAT 48726 ||||||| | ||| || | ||| || |||||||| ||| ||||||| Sbjct 65403 TATACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTAT 65453 >seq9146 Length=70564 Score = 159 bits (176), Expect = 5e-34 Identities = 375/556 (67%), Gaps = 10/556 (2%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || |||||||| || | ||||| |||| | |||| ||| || || || || | | Sbjct 54237 CAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAA 54296 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||| || || ||||| || ||||| || |||| | |||| | || || ||||| Sbjct 54297 CCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAA 54355 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || ||||| || || || || || | || || | || | | | | | Sbjct 54356 GATACCTTCAACACAAGCGAAAGC--TACGATTCGTTCAGCAAAAGTTTGAGATCCATCG 54413 Query 48318 ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || | ||||| | || |||||| | || ||||| || ||||| || || Sbjct 54414 ATCCAA-GTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCG 54472 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||||||| | | | || || ||||||| | || ||||| | | ||||||||||| Sbjct 54473 AAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACAT 54532 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || |||||||| ||||| || || ||||||||||||||| | ||| || | || Sbjct 54533 CTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGAC 54592 Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || || || | ||| ||||| ||| | |||||| || |||||||| |||| Sbjct 54593 TTGAACATCTG-ACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAG 54651 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | ||||| || | || ||||| || || | ||| | | || || | ||| | Sbjct 54652 CGAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAAT 54711 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 || || | ||||| |||||||||||| || ||||| |||||||| || ||||| | Sbjct 54712 CACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCT 54771 Query 48676 TATACATATTCCATAT 48691 | ||||| | ||| || Sbjct 54772 TGTACATCTCCCAGAT 54787 >seq11110 Length=291012 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||||| || || | ||| | || | ||||||||||| |||||| Sbjct 226147 CCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACCA 226206 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| ||| || |||||| || || Sbjct 226207 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGAA 226266 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||| | ||||||||| || Sbjct 226267 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAATG 226326 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || || ||||| ||||| | |||||||||||| Sbjct 226327 CCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 77490 AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 77549 || ||||| |||||||| | || || || ||||||||||||||||| || | | | || Sbjct 224897 AGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTTT 224956 Query 77550 GAAATTTTAGCT-TCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605 ||| |||| ||| ||| | |||||| ||||| | |||||||| ||||||||||| Sbjct 224957 GAAGTTTTTGCTGTCT-CCACAGGATAGTAATTCACATCTATAATCTTATTGAGATT 225012 >seq8766 Length=69736 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||| || | || ||||||||||| || |||||| | | ||| | | || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| || || |||||||| || | ||| ||||| || || || || | ||||| Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || |||||||||||||| | | |||||||| | ||||||| |||| | Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAACTGTCCCTTGGATTTTCAAAAGGTATGATCTTTCAA 54753 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||| |||||| | | ||| ||| || | || || ||||| Sbjct 54754 GAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| || || | ||| | || | ||||||||| | |||||| Sbjct 54243 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGGACAATACCA 54302 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| |||| ||||||||| || || Sbjct 54303 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCTCGAATATTATGAACTGAA 54362 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || || | ||| || || || Sbjct 54363 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACATTCCTTAAGTGTTTCATAAATG 54422 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || ||||| ||||| Sbjct 54423 CCCTCAATGCTATCATCTTTCATG 54446 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||||| || || || | ||||||||||| |||||| ||| ||| || Sbjct 53791 CTCTCTTTCATATTTTGTGTACAGTCTCTCAAATTCATCACCCCAACAATCTGCCAGACC 53850 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| |||||| ||||| | || |||||| | ||||| || |||| | ||| || Sbjct 53851 AGGAGCTTCATTAGGGCAAAACAGTGACCACTGCCCATCACTCTGGACTCTCTCCATGAA 53910 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||| || | ||| |||||| || | |||| | || |||||||| Sbjct 53911 AAGATCTGGAACCCAGAGAGCATAGAACAAGTCTCTAGCCCTGTGTTCTTC 53961 >seq11555 Length=225698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||||||| | ||||| || |||||||||||| | | ||||||| || || | Sbjct 11470 CAAGACTCTACGACTATAAATGTTGGAGGTATATGGTTCAAAACATTCATTATTCCCAAG 11529 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| ||| || |||||||||||||| |||||||| | | | ||||||| |||| Sbjct 11530 AATCTGACTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAGTTTCTGATTCCATT 11589 Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320 || | |||| ||||| ||| ||||| | |||||||| | |||| ||| Sbjct 11590 CTTTGAAACCATATCCCTTAGAGCAACCCAGTCCCATCGGTCTGAAGGGATTACATTCCA 11649 Query 77321 AAGATCGTATTGTAGAATTCCGTTACTAGCAT 77352 | ||| ||| ||||| || | || || || Sbjct 11650 CATATCTGGTTGAAGAATACCCTAACAAGGAT 11681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694567074437600